View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_18 (Length: 452)
Name: NF2810_high_18
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Original strand, 22955524 - 22955946
Alignment:
| Q |
15 |
gaggagaagggttatatccattgcacttctatttgtaggggagcccctctggtcccttaacacttgtttgttgatgattgttttctatttattagatttg |
114 |
Q |
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| T |
22955524 |
gaggagaagggttatatccattgcactt-tatttgtaggggagcccctctggtctcttaacacttgtttgttgatgattgttttctatttattagagttg |
22955622 |
T |
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| Q |
115 |
aggtgtgttagactcaaattatgaaaaacatccttactgtgtatgaggcagcctctagtcaagatattattctccccaagtcaaatatatattgcaatag |
214 |
Q |
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| T |
22955623 |
aggtgcgttagacccaaattatgaaaaacatccttactgtgtataaggcagcctctagtcaagatattattctccccaaatcatatatgtattgcagtag |
22955722 |
T |
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| Q |
215 |
gaatgttcctgcgactttaaagacttccatcacaaatgttttaggggttcaatatgtgatcgatacatgtaagtatttgagactttcgtccatgatcagt |
314 |
Q |
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| T |
22955723 |
gaatgttcctgtgactttaaagacttccatcacaaatgttttaggggttcaatatgtgatcggtacatgtaagtatttgagactttcgtccatgatcagt |
22955822 |
T |
|
| Q |
315 |
agagatagaataacaacttattcttataacaaggctgaaagtttcaaactgatccaaactctctagtttctcgttgtataaagctcggtacttccccact |
414 |
Q |
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| T |
22955823 |
agagatagaataacaacttattcttataacaaggctgaaagtttcaaactgatccaaactctctagtttctcgttatataaagctcggtacttccccact |
22955922 |
T |
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| Q |
415 |
ggaagttatgtcacagccaacttg |
438 |
Q |
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| T |
22955923 |
ggaagttatgtcacatccaacttg |
22955946 |
T |
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Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 129 - 339
Target Start/End: Original strand, 9281883 - 9282093
Alignment:
| Q |
129 |
caaattatgaaaaacatccttactgtgtatgaggcagcctctagtcaagatattattctccccaagtcaaatatatattgcaataggaatgttcctgcga |
228 |
Q |
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|||||||||||||||||||||| | |||| |||| || |||| || ||| ||||| ||| | ||| ||| | |||||||||| ||||||||||||| | |
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| T |
9281883 |
caaattatgaaaaacatccttattctgtacgaggaagactctggtaaagctattagtcttcgcaaatcatagatatattgcagcaggaatgttcctgaca |
9281982 |
T |
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| Q |
229 |
ctttaaagacttccatcacaaatgttttaggggttcaatatgtgatcgatacatgtaagtatttgagactttcgtccatgatcagtagagatagaataac |
328 |
Q |
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||||||||||||||||||| || |||| |||||||||| | || | | |||||||||||||||| ||||| ||||||||||| | |||||||||| ||| |
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| T |
9281983 |
ttttaaagacttccatcacatatattttgggggttcaatttatgttgggtacatgtaagtatttgggacttccgtccatgatcggcagagatagaacaac |
9282082 |
T |
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| Q |
329 |
aacttattctt |
339 |
Q |
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||||| ||||| |
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| T |
9282083 |
aactttttctt |
9282093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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