View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_high_20 (Length: 434)

Name: NF2810_high_20
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_high_20
NF2810_high_20
[»] chr6 (2 HSPs)
chr6 (1-229)||(34691008-34691236)
chr6 (294-416)||(34690822-34690944)
[»] chr2 (10 HSPs)
chr2 (1-229)||(26988933-26989161)
chr2 (294-416)||(26988746-26988868)
chr2 (350-416)||(27076447-27076513)
chr2 (333-416)||(21432814-21432896)
chr2 (350-406)||(27028074-27028130)
chr2 (352-416)||(27099551-27099615)
chr2 (356-414)||(27151628-27151687)
chr2 (94-174)||(27028148-27028237)
chr2 (86-126)||(27076180-27076220)
chr2 (126-178)||(27076251-27076303)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34691236 - 34691008
Alignment:
Q  1 atctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttgttgtaagcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34691236 atctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttgttgtaagcttt 34691137  T
Q  101 ccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaataagatcgaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  34691136 ccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataataagatcgaggt 34691037  T
Q  201 ctcatgctctatgacagtaagttacaatg 229  Q
    |||||||||||||||||||||||||||||    
T  34691036 ctcatgctctatgacagtaagttacaatg 34691008  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 294 - 416
Target Start/End: Complemental strand, 34690944 - 34690822
Alignment:
Q  294 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690944 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 34690845  T
Q  394 ctgggctcaaacgatgaagggaa 416  Q
    |||||||||||||||||||||||    
T  34690844 ctgggctcaaacgatgaagggaa 34690822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26989161 - 26988933
Alignment:
Q  1 atctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttgttgtaagcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||    
T  26989161 atctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttgttgcaaacttt 26989062  T
Q  101 ccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaataagatcgaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  26989061 ccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataataagatcgaggt 26988962  T
Q  201 ctcatgctctatgacagtaagttacaatg 229  Q
    |||||||||||||||||||||||||||||    
T  26988961 ctcatgctctatgacagtaagttacaatg 26988933  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 294 - 416
Target Start/End: Complemental strand, 26988868 - 26988746
Alignment:
Q  294 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 393  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988868 ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 26988769  T
Q  394 ctgggctcaaacgatgaagggaa 416  Q
    |||||||||||||||||||||||    
T  26988768 ctgggctcaaacgatgaagggaa 26988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 27076447 - 27076513
Alignment:
Q  350 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 416  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27076447 attaccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaa 27076513  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 21432896 - 21432814
Alignment:
Q  333 ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 416  Q
    ||||||| |||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  21432896 ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 21432814  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 27028130 - 27028074
Alignment:
Q  350 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27028130 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacg 27028074  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 27099551 - 27099615
Alignment:
Q  352 taccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 416  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||| ||||| |||||||||||    
T  27099551 taccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaa 27099615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 27151687 - 27151628
Alignment:
Q  356 ttctagagaatctgtatgggtttttaaatgcatttcttct-gggctcaaacgatgaaggg 414  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||    
T  27151687 ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggg 27151628  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
Q  94 aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa 174  Q
    ||||||||||||||||||||||| ||| ||||         ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  27028237 aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa 27028148  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
Q  86 cttgttgtaagctttccaaaagcatttaacagacacaactg 126  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27076180 cttgttgcaagctttccaaaagcatttaacaaacacaactg 27076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 27076251 - 27076303
Alignment:
Q  126 gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatg 178  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||||||    
T  27076251 gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatg 27076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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