View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_22 (Length: 421)
Name: NF2810_high_22
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 31859991 - 31859608
Alignment:
| Q |
20 |
tgtcaagtcgattttgctaacaataacttagtggtgagtagtattaccttggaattgtactgagttcactgaaaagataataagcacaccctgaaataag |
119 |
Q |
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| T |
31859991 |
tgtcaagtcgattttgctaacaataacttaatggtgagtagtatcaccttggaattgtactgagttcactgaaaagataataagcacaccctgaaataag |
31859892 |
T |
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| Q |
120 |
aagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaa |
219 |
Q |
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| T |
31859891 |
aagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaa |
31859792 |
T |
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| Q |
220 |
gcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaactcaaagcaacgactttgatgctcactttccagctccgg |
319 |
Q |
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| T |
31859791 |
gcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaactcataacaacgactttgatactcactttccagctccgg |
31859692 |
T |
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| Q |
320 |
agggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtctttgttgttgatattgatctactagact |
403 |
Q |
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| T |
31859691 |
agggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtcattgttgtggatattgatctactagact |
31859608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 8869428 - 8869545
Alignment:
| Q |
132 |
aatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaagcatctgaatgg |
231 |
Q |
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| T |
8869428 |
aatgcaggtattgcttgcactacaaggaaacatgggtagaataataacatcaaagtggttaaccaaaaaaggggtgtgcacaatggaagcatctgaatgg |
8869527 |
T |
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| Q |
232 |
aatggattaacacaaatt |
249 |
Q |
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| T |
8869528 |
aatggactaacacaaatt |
8869545 |
T |
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