View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_high_3 (Length: 633)
Name: NF2810_high_3
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 31 - 621
Target Start/End: Original strand, 25275673 - 25276247
Alignment:
| Q |
31 |
tagacatttaacttgcccagaagaggcggaaggtacttgctcttgtgctacagtgtgttgaaccgacaaattactcacttccggtggcagaaaaaatatc |
130 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25275673 |
tagacatttaacttgcccagaagaggcagaaggtacttgctcttgcgctacagtgtgctgaaccgacaaattactcacttccggtggccgaaaaaatatc |
25275772 |
T |
|
| Q |
131 |
ctcatgcacgtcaacatgctctataatagatggaaccggagtagcagctggagaagtgggaacgctcatgttctgatcatctggatgtgtttgctcgact |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25275773 |
ctcatgcacgtcaacatgctctataatagatggaaccagagtagcagctggagaagtaggaacgctcatgttctgatcatctggatgtgtttgctcgact |
25275872 |
T |
|
| Q |
231 |
ccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaattgcgtctgaaacat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25275873 |
ccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaattgcgtctgaaacat |
25275972 |
T |
|
| Q |
331 |
tttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaatttcagagttaaccatgac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25275973 |
tttgcaatgcaaagctaaaagtattggcagtaacatcatgagtaggcgcatcagaatgttaagctgcaactgttgccgtaatttcagagttaaccatgac |
25276072 |
T |
|
| Q |
431 |
ttctaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaac |
530 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25276073 |
ttgtaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacc----------------aac |
25276156 |
T |
|
| Q |
531 |
cttccctttccaccatgaattcgtagatgagacgccttgaaatatcaatatccaccagcacctgtgcgtaatggccaaatgtgcgtttctg |
621 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
25276157 |
cttccctttccaccatgacttcgtagatgagacgccttgaaatatcaatatccaccagcacctgcgtgtaatggccaaatgtgcgtttctg |
25276247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 5570044 - 5570497
Alignment:
| Q |
18 |
tattgtgctcaactagacatttaacttgcccagaagaggcggaaggtacttgctcttgtgctacagtgtgttgaaccgacaaattactcacttccggtgg |
117 |
Q |
| |
|
|||||||||| | | ||| |||||||||| |||||||||| |||||||||| |||||| |||| |||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
5570044 |
tattgtgctcgattggacttttaacttgcacagaagaggctgaaggtacttcctcttgcgctagagtgtgctgaaccaacaaattactcacttccg-tgg |
5570142 |
T |
|
| Q |
118 |
cagaaaaaatatcctcatgcacgtcaacatgctctataatagatggaaccgga---gtagcagctggagaagtgggaacgctcatgttctgatcatctgg |
214 |
Q |
| |
|
| |||| ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
5570143 |
cggaaacaatatcctcatgcacgtcaacgtgctctacaatagatggaaccggatcagcagcagctggagaagtaggaacactcatgtcttgatcatccgg |
5570242 |
T |
|
| Q |
215 |
atgtgtttgctcgactccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttga |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5570243 |
atgtgtttgctcgactctaagtgaatgcacgtcatcgtgcgcaactacagtagataattccaacacgggagaggcaggttgaggcaacaaaccctgttga |
5570342 |
T |
|
| Q |
315 |
attgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaattt |
414 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
5570343 |
attgcgtccgaaatattt-----tgcaaagctaaaagtattggcaataacatcatgagtaggcgcatcagaatgtgaagttgcgactgttgccgtaattt |
5570437 |
T |
|
| Q |
415 |
cagagttaacca-tgacttctaaaaagcgagcgaggaatcaataccaaggggatttttgc |
473 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||| || | |||||||||||||||| |
|
|
| T |
5570438 |
cagagttaaccattgacttctcaaaagcgaatgaggaaccattgccaaggggatttttgc |
5570497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 543
Target Start/End: Original strand, 32136215 - 32136282
Alignment:
| Q |
476 |
tgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaaccttccctttccac |
543 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||||| |||||| | |||||||||||||| |
|
|
| T |
32136215 |
tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccac |
32136282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University