View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_high_37 (Length: 322)

Name: NF2810_high_37
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_high_37
NF2810_high_37
[»] chr7 (8 HSPs)
chr7 (159-312)||(8942943-8943096)
chr7 (1-160)||(10590852-10591010)
chr7 (225-312)||(38656945-38657032)
chr7 (1-125)||(10590304-10590428)
chr7 (247-312)||(13926055-13926119)
chr7 (161-234)||(15746660-15746733)
chr7 (155-207)||(13931851-13931903)
chr7 (14-127)||(29685117-29685230)
[»] chr4 (3 HSPs)
chr4 (161-311)||(26889286-26889436)
chr4 (161-312)||(13736514-13736665)
chr4 (1-37)||(36253493-36253529)
[»] chr3 (5 HSPs)
chr3 (177-312)||(51846851-51846986)
chr3 (161-312)||(52616421-52616572)
chr3 (161-305)||(41523487-41523631)
chr3 (158-312)||(11758853-11759007)
chr3 (161-294)||(29223285-29223420)
[»] chr2 (3 HSPs)
chr2 (161-305)||(15573347-15573491)
chr2 (221-312)||(29075916-29076007)
chr2 (161-202)||(3813791-3813832)
[»] chr1 (6 HSPs)
chr1 (217-312)||(27052624-27052720)
chr1 (14-129)||(21261242-21261357)
chr1 (58-125)||(21257836-21257903)
chr1 (1-36)||(27745562-27745597)
chr1 (1-39)||(1099897-1099935)
chr1 (160-202)||(13537945-13537987)
[»] chr5 (3 HSPs)
chr5 (221-312)||(13578929-13579020)
chr5 (249-312)||(22292705-22292767)
chr5 (1-33)||(39936261-39936293)
[»] chr6 (4 HSPs)
chr6 (247-312)||(629884-629949)
chr6 (247-312)||(2196936-2197000)
chr6 (247-310)||(24016767-24016829)
chr6 (161-234)||(1569578-1569651)
[»] chr8 (2 HSPs)
chr8 (158-231)||(45483068-45483141)
chr8 (160-207)||(32057264-32057311)
[»] scaffold1603 (1 HSPs)
scaffold1603 (247-312)||(192-256)
[»] scaffold0031 (1 HSPs)
scaffold0031 (247-312)||(91205-91269)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-37)||(6470-6506)
[»] scaffold0268 (1 HSPs)
scaffold0268 (248-312)||(18950-19013)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 159 - 312
Target Start/End: Original strand, 8942943 - 8943096
Alignment:
Q  159 tgggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctgg 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8942943 tgggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctgg 8943042  T
Q  259 aatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  8943043 aatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgct 8943096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10591010 - 10590852
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgatgaaacaccnnnnnnncatcgttagattgaatcaacaatcaagattatttaaaagtaaaattgag 100  Q
    |||||||||||| |||||||||| |||||||||  |||||||||       ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  10591010 ttctaaggtgagggttcaattaactccctcacctgtgaaacaccaaaaaaacatcgttagattgaatcaacagtcaagattatttaaa-gtaaaattgag 10590912  T
Q  101 aacgtctattcctttccacacacaattttccacccatatcctctgcaacctgagaagatg 160  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10590911 aacgtctactcctttccacacacaattttccacccatatcctctgcaacctgagaagatg 10590852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 38656945 - 38657032
Alignment:
Q  225 aggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    |||||||||||||||||   ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||    
T  38656945 aggtggcggtaaaaattgattttttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgct 38657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10590304 - 10590428
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgatgaaacaccnnnnnnncatcgttagattgaatcaacaatcaagattatttaaaagtaaaattgag 100  Q
    ||||| ||||||||||||||||||||||||| || |||| ||||       |||| ||||||||||||||   |||||||||||||||| |||||| |||    
T  10590304 ttctagggtgagagttcaattaagtccctcatcggtgaagcaccaaaaaaacatcattagattgaatcaagggtcaagattatttaaaaataaaatcgag 10590403  T
Q  101 aacgtctattcctttccacacacaa 125  Q
    ||| |||||| ||||||||||||||    
T  10590404 aacatctatttctttccacacacaa 10590428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 13926119 - 13926055
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||| ||||||    
T  13926119 tttacctgctggaatattttaataaaacatattatattataaaata-ttcatttattgtttctgct 13926055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 15746733 - 15746660
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggt 234  Q
    ||||||||||||  |||||||||| ||||||| |||||||||||||||    |||||||||||||| |||||||    
T  15746733 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaagggaaagatttttggacagctggcggt 15746660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 13931903 - 13931851
Alignment:
Q  155 aagatgggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaa 207  Q
    |||| |||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  13931903 aagaagggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 13931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 29685230 - 29685117
Alignment:
Q  14 gttcaattaagtccctcaccgatgaaacaccnnnnnnncatcgttagattgaatcaacaatcaagattatttaaaagtaaaattgagaacgtctattcct 113  Q
    ||||||||||||||||||| | |||| ||||       |||| ||||||||||||||    | ||||||||| ||| |||||   ||||| | |||||||    
T  29685230 gttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcct 29685131  T
Q  114 ttccacacacaatt 127  Q
    ||||||||||||||    
T  29685130 ttccacacacaatt 29685117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 161 - 311
Target Start/End: Complemental strand, 26889436 - 26889286
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 260  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26889436 ggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaagtcttagatttttggataggtggcggtaaaaattccctttttacctgctggaa 26889337  T
Q  261 tattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgc 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  26889336 tattttaatcaaaaatattatattgtaaaatattccatttattgtttctgc 26889286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 312
Target Start/End: Original strand, 13736514 - 13736665
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 260  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||   |||||||||||||| | ||||||||||  || ||||| ||| ||||||    
T  13736514 ggtggcatttagggtgcacaaagggaagatttgtgcaccatgcacaagtgaaagatttttggacagctagcggtaaaaacaccttttttcccttctggaa 13736613  T
Q  261 tattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  13736614 tattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 13736665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36253493 - 36253529
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgatg 37  Q
    |||||||||||| |||| |||||||||||||||||||    
T  36253493 ttctaaggtgagggttctattaagtccctcaccgatg 36253529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 177 - 312
Target Start/End: Original strand, 51846851 - 51846986
Alignment:
Q  177 cacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaat 276  Q
    |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51846851 cacagggggaagatttgtgcaccatgcacaaatcttaaatttttggacaggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaat 51846950  T
Q  277 attatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||| ||||||||||||||||||| ||||||    
T  51846951 attatattgaaaaatatttcatttattgtttctgct 51846986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 161 - 312
Target Start/End: Complemental strand, 52616572 - 52616421
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 260  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  |  ||||||||||||||||    
T  52616572 ggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaaggcttagatttttggacaggtggcggtaaaaaagcaatttttacctgctggaa 52616473  T
Q  261 tattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||| ||||||    
T  52616472 tattttaatgaaaaatattatattgtataatattccatttattgtttctgct 52616421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 41523631 - 41523487
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 260  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||    ||||||||||||| ||||||||||||  |  |||||||||| || ||    
T  41523631 ggtggcatttagggtgcacaaggagaagatttgtgtaccatgcacaagtgaacgatttttggacagctggcggtaaaaaagcaatttttacctgttgaaa 41523532  T
Q  261 tattttaatcaaaaatattatattgtaaaatatttcatttattgt 305  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||    
T  41523531 tattttaatgaaaaatattatattgtaaaatattccatttattgt 41523487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 312
Target Start/End: Original strand, 11758853 - 11759007
Alignment:
Q  158 atgggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctg 257  Q
    |||||||||||||||  |||||||||  ||||||| ||||||||||||||    |  | |||||||||| ||||||||||||     |||||||||||||    
T  11758853 atgggtggcatttagcatgcacaaggaaaagatttgtgcaccatgcacaacctatgaaattttggacagttggcggtaaaaagggtttttttacctgctg 11758952  T
Q  258 gaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||| |||||||| ||| |||| ||||||||||||||| |||||||||| ||||||    
T  11758953 gaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgct 11759007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 29223420 - 29223285
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccc--tttttacctgctgg 258  Q
    |||| ||||||||||| | ||||||||||||| |||| |||||| |||    |  ||||| ||||| ||| ||||||||  | |  |||||| |||| ||    
T  29223420 ggtgacatttagggtgtataaggggaagatttatgcatcatgcataagggaaattttttttgacagttggtggtaaaaacacacattttttatctgcagg 29223321  T
Q  259 aatattttaatcaaaaatattatattgtaaaatatt 294  Q
    ||||||||||| ||| ||||||||||||||||||||    
T  29223320 aatattttaatgaaacatattatattgtaaaatatt 29223285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 15573491 - 15573347
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 260  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||   |||||||||||||| ||||||||||||  || ||||||||||||||||    
T  15573491 ggtggcatttaggatgcacaaggggaagatttgtgcaccatgcacaagtgaaagatttttggacagttggcggtaaaaacaccttttttacctgctggaa 15573392  T
Q  261 tattttaatcaaaaatattatattgtaaaatatttcatttattgt 305  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  15573391 tattttaatgaaacatattatattgtaaaatattccatttattgt 15573347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 29076007 - 29075916
Alignment:
Q  221 ggacaggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  29076007 ggacagctggcggtaaaaattgattttttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 29075916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 3813832 - 3813791
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatg 202  Q
    |||||||||||||||||||| ||| ||||||| |||||||||    
T  3813832 ggtggcatttagggtgcacatgggtaagatttgtgcaccatg 3813791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 27052720 - 27052624
Alignment:
Q  217 ttttggacaggtggcggtaaaaattcccttttt-acctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    |||||||||||||| |||||||| | | ||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  27052720 ttttggacaggtggaggtaaaaactgctttttttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 27052624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 21261357 - 21261242
Alignment:
Q  14 gttcaattaagtccctcaccgatgaaacaccnnnnnnncatcgttagattgaatcaacaatcaagattatttaaaagtaaaattgagaacgtctattcct 113  Q
    |||||||||| ||| ||||||||||| |||        |||| |||||||||||||||  |||  ||||||| ||||||||||||||||| | ||||| |    
T  21261357 gttcaattaaatccttcaccgatgaagcacaaaaaaaccatcattagattgaatcaacggtcagaattatttgaaagtaaaattgagaacatgtattcgt 21261258  T
Q  114 ttccacacacaatttt 129  Q
    || |||||||||||||    
T  21261257 tttcacacacaatttt 21261242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 21257903 - 21257836
Alignment:
Q  58 tagattgaatcaacaatcaagattatttaaaagtaaaattgagaacgtctattcctttccacacacaa 125  Q
    |||||||||||||   | || ||||||||||||||||||| ||||| |||||| ||||||||| ||||    
T  21257903 tagattgaatcaatggttaaaattatttaaaagtaaaattaagaacatctatttctttccacaaacaa 21257836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27745562 - 27745597
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgat 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  27745562 ttctaaggtgagggttcaattaagtccctcaccgat 27745597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1099897 - 1099935
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgatgaa 39  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  1099897 ttctagggtgagagttctattaagtccctcaccgatgaa 1099935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 13537987 - 13537945
Alignment:
Q  160 gggtggcatttagggtgcacaaggggaagatttctgcaccatg 202  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||    
T  13537987 gggtggcatttagggtgcacatgggtaagatttgtgcaccatg 13537945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 13579020 - 13578929
Alignment:
Q  221 ggacaggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    |||||| |||||||||||||||   ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| | ||||||    
T  13579020 ggacagttggcggtaaaaattcaaattttacctgctggaatattctaatcaaaaatattataatgtaaaatattccatttattatttctgct 13578929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 22292767 - 22292705
Alignment:
Q  249 tacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||    
T  22292767 tacctgctggaatattttaatgaaacatattatattgtaaaata-ttcatttattgtttctgct 22292705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39936261 - 39936293
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcacc 33  Q
    |||||||||||| ||||||||||||||||||||    
T  39936261 ttctaaggtgagggttcaattaagtccctcacc 39936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 629884 - 629949
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  629884 tttacctgctggaatattttaatcaaaaatattatattgtataatattccatttattgtttctgct 629949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 2197000 - 2196936
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||    
T  2197000 tttacctactggaatattttaatgaaacatattatattgtaaaata-ttcatttattgtttctgct 2196936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 24016767 - 24016829
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctg 310  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||| ||||    
T  24016767 tttacctgctggattattttaatgaaacatattatattgtaaaata-ttcatttattgtttctg 24016829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 1569578 - 1569651
Alignment:
Q  161 ggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggcggt 234  Q
    ||||||||||||  |||||||||| ||||||| |||||||||||||||    |||||||||||||| |||||||    
T  1569578 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaagggaaagatttttggacagctggcggt 1569651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 45483141 - 45483068
Alignment:
Q  158 atgggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaagtcttagatttttggacaggtggc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||||   ||||||||| |||||||||    
T  45483141 atgggtggcatttagggtgcacaaggggaagatttgtgcaccaaacacaagtgaaagatttttgaacaggtggc 45483068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 32057264 - 32057311
Alignment:
Q  160 gggtggcatttagggtgcacaaggggaagatttctgcaccatgcacaa 207  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  32057264 gggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 32057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 256 - 192
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||    
T  256 tttaccttctggaatattttaatgaaacatattatattgtaaaata-ttcatttattgtttctgct 192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 91269 - 91205
Alignment:
Q  247 tttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||| ||||||    
T  91269 tttacctgctggattattttaatgaaacatattatattgtaaaata-ttcatttattgtttctgct 91205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6470 - 6506
Alignment:
Q  1 ttctaaggtgagagttcaattaagtccctcaccgatg 37  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatg 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 19013 - 18950
Alignment:
Q  248 ttacctgctggaatattttaatcaaaaatattatattgtaaaatatttcatttattgtctctgct 312  Q
    ||||||||| ||||||||||||     |||||||||||||||||| |||||||||||| ||||||    
T  19013 ttacctgctagaatattttaatgtttcatattatattgtaaaata-ttcatttattgtttctgct 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University