View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_39 (Length: 312)
Name: NF2810_high_39
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 3323941 - 3324237
Alignment:
| Q |
1 |
gtgcttataagtcggagacacctctcaccttatttattgtagggttgagttagaccaacccaaattttaagaactgcgagctatctttgaatatttgtag |
100 |
Q |
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| T |
3323941 |
gtgcttataagtcggagacacctctcaccttatttattgtatggttgagttagaccaacccaaattttaagaactgcaagctatctttgaatacttgttg |
3324040 |
T |
|
| Q |
101 |
tatatattattctctgaaagccctgcagctacatttcttctagttgttgttcccaagctaaacttgggaattgattcatagagatttccataactccatt |
200 |
Q |
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| T |
3324041 |
tatatattattttatgaaagccctgcagcttcatttcttctagttgttgttcccaagctaaactttggaattcattcatagagattttcataactccatt |
3324140 |
T |
|
| Q |
201 |
attggg-aaaatctaaatccctcatagaataaagataagtcctgattagagtttataaacagtgtcccccggcacctaaaaacaccggttttgtaag |
296 |
Q |
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|||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
3324141 |
attgggaaaaacctaaatcccacatagaataaagacaagtcctgattagagtttagaaacggtgtcccccggcacctaaaaacaccggttttgtaag |
3324237 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 43760665 - 43760701
Alignment:
| Q |
35 |
tattgtagggttgagttagac-caacccaaattttaa |
70 |
Q |
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| T |
43760665 |
tattgtagggttgagttagactcaacccaaattttaa |
43760701 |
T |
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