View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_high_4 (Length: 593)
Name: NF2810_high_4
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 7 - 577
Target Start/End: Complemental strand, 52034127 - 52033557
Alignment:
| Q |
7 |
agcaaaggtgagagcccaccatggcatttgtatctcttctttcatgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaac |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034127 |
agcaaagatgagagcccaccatggcatttgtatctcttctttcttgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaac |
52034028 |
T |
|
| Q |
107 |
caccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034027 |
caccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagt |
52033928 |
T |
|
| Q |
207 |
tagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatagcaaag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
52033927 |
tagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggcaacg |
52033828 |
T |
|
| Q |
307 |
tgagtgagtgtagagacaatggcagcaaggccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattatatgcatccatat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033827 |
tgagtgagtgtagagacaatggcagcaaagccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattatatgcatccatat |
52033728 |
T |
|
| Q |
407 |
ctatctcaaacttgttgttcacaatagctgtcacattgtatctcacaccttgagcagtgaatagttcattagagtatatggggaagtttttggcattata |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033727 |
ctatctcaaacttgttgttcacaatagctgtcacattgtatctcacaccttgagcactgaatagttcattagagtatatggggaagtttttggcattata |
52033628 |
T |
|
| Q |
507 |
gagattaaatccccaataagccgttggaataagaatgtagattaataaaatgtagccaacaaggatgttaa |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033627 |
gagattaaatccccaataagccgttggaataagaatgtagattaataaaatgtagccaacaaggatgttaa |
52033557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University