View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_46 (Length: 287)
Name: NF2810_high_46
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_46 |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0718 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 45899638 - 45899870
Alignment:
| Q |
19 |
gacccacataccaattcatgtatggttctagacctgcaaaaaagaagcatctatattccatttaaaattgatatggaatcaacgtcgtatacttctcatg |
118 |
Q |
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| T |
45899638 |
gacccacataccaatttatgcatggttccagacctgcaaaaaagaagcatatatattccatttaaaattgatatggaatcaacgtcgtatacttctcatg |
45899737 |
T |
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| Q |
119 |
ttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagcttaacaccaacttacgtgtcaagttaatgatg |
218 |
Q |
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| T |
45899738 |
ttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagcttaacaccagcttacgtgtcaagttaatgatg |
45899837 |
T |
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| Q |
219 |
ttaaagaagcgtcgtttgagggacaacccataa |
251 |
Q |
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| T |
45899838 |
ttaaagaagcgtcgtttgaggggcaacccataa |
45899870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 36531180 - 36531285
Alignment:
| Q |
87 |
tgatatggaatcaacgtcgtatacttctcatgttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagc |
186 |
Q |
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| T |
36531180 |
tgatatggaagcaacatcatctattgctcaagttcatggagttcttatccaacaaaaggaagaacaaggatgatgtgttctttgtatcatatatgccacc |
36531279 |
T |
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| Q |
187 |
ttaaca |
192 |
Q |
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|||||| |
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| T |
36531280 |
ttaaca |
36531285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 12677560 - 12677456
Alignment:
| Q |
88 |
gatatggaatcaacgtcgtatacttctcatgttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagct |
187 |
Q |
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| T |
12677560 |
gatatggaagcaacatcatctatttttcaagttcatggagttcttacccaacaaaaggaagaagaaggatgatgacttctttgtatcatatatgccagct |
12677461 |
T |
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| Q |
188 |
taaca |
192 |
Q |
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||||| |
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| T |
12677460 |
taaca |
12677456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 41109 - 41035
Alignment:
| Q |
118 |
gttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagcttaaca |
192 |
Q |
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| T |
41109 |
gttcatggagttcttacccaacaaaaggaagaagaaggatgatgagttctttgtatcatatatgccaccttaaca |
41035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 2877665 - 2877769
Alignment:
| Q |
88 |
gatatggaatcaacgtcgtatacttctcatgttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagct |
187 |
Q |
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| T |
2877665 |
gatatggaaacaacatcatctatttttcaagttcatggagttcttacccaacaaaaggaagaagaaggatgatgagttctttgtatgatatatgccacct |
2877764 |
T |
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| Q |
188 |
taaca |
192 |
Q |
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||||| |
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| T |
2877765 |
taaca |
2877769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 686 - 760
Alignment:
| Q |
118 |
gttcatggagttattaccgaacaaaagaaagaataaggatgatgtgttttttgtgtcatatatgtcagcttaaca |
192 |
Q |
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| T |
686 |
gttcatggagttcttaaccaacaaaaggaagaagaaggatgatgagttctttgtatcatatatgccaccttaaca |
760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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