View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_49 (Length: 274)
Name: NF2810_high_49
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 52369458 - 52369211
Alignment:
| Q |
16 |
ataattttgtgcagatttgtgggacattatatttatgggggtgtctgttactgatttgtcaaataatgggtccaataagatgagtacttcaagcaggttg |
115 |
Q |
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| T |
52369458 |
ataattttgtgcagatttgtgggacattatatttatgggggtgtctgttactgatttgtcaaat---gggtccaataagatgagtacttcaagcaggttg |
52369362 |
T |
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| Q |
116 |
agtgattgcagacctcaacacatgattcttgaaagaaaccattcatttgttcaagataaagaacaaaacatggattcatccaaaagtgatcaattgaaac |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
52369361 |
agtgattgcagacctcaacatatgattcttgaaagaaaccattcatttgttcaagataaagaacagaacatggattcaaccaaaagtgatcaattgaaac |
52369262 |
T |
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| Q |
216 |
ataaacaagttccagtgatttctctgcctgaagcacttgttttttcttctc |
266 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52369261 |
ataaacaagttccattgatttctctgcctgaagcacttgttttttcttctc |
52369211 |
T |
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