View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_50 (Length: 268)
Name: NF2810_high_50
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 12843583 - 12843354
Alignment:
| Q |
19 |
cttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtct |
118 |
Q |
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| T |
12843583 |
cttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtct |
12843484 |
T |
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| Q |
119 |
actgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgttt |
218 |
Q |
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| T |
12843483 |
actgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgttt |
12843384 |
T |
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| Q |
219 |
gatattagtcttgttgagtattgcacttat |
248 |
Q |
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| T |
12843383 |
gatattagtcttgttgagtattgcacttat |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 12861921 - 12862057
Alignment:
| Q |
42 |
caagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcatt |
141 |
Q |
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| T |
12861921 |
caagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcact |
12862020 |
T |
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| Q |
142 |
cttatgttcttaactcattttagagattatagtgtta |
178 |
Q |
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| T |
12862021 |
cttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
103 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
177 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
81 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
121 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
201 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
248 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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