View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_55 (Length: 250)
Name: NF2810_high_55
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8537865 - 8537624
Alignment:
| Q |
1 |
aacaatcacaacaccatcattaaatccattattttcactgcgtcgttgaactttattatccgaaatcgttaaattcggaagaagaacgaaagggtcatgc |
100 |
Q |
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| T |
8537865 |
aacaatcacaacaccatcattaaatccattattttcaccgcgtcgttgaagtttattatccgaaatcgttaaatttggaagaagaacgaaagggtcatgc |
8537766 |
T |
|
| Q |
101 |
aatttagcggcggatttacgatattcagaggaacgaccatcagtggagatacggtgtttgatggaatcggcgacggcggcggagtcgggggtgatggtgg |
200 |
Q |
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| T |
8537765 |
gatttagcggcggatttacgatattcagaggaatgaccatcggtggagatacaacgttcgatggaatcggcgacggcggcggagtcgggggtgatggtgg |
8537666 |
T |
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| Q |
201 |
act-agggttttactagacgtgagagtttttgttgttcttct |
241 |
Q |
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| T |
8537665 |
attaaggcttttactagacctgagagtttttgttgttcttct |
8537624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 37200384 - 37200498
Alignment:
| Q |
8 |
acaacaccatcattaaatccattattttcactgcgtcgttgaactttattatccgaaatcgttaaattcggaagaagaacgaaagggtcatgcaatttag |
107 |
Q |
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| T |
37200384 |
acaacaccatcattaaatccattattttcaccgcgcggttgaacgttattctccgaaatcgttaaattgggaagaagaacggaagggtcattcgatttag |
37200483 |
T |
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| Q |
108 |
cggcggatttacgat |
122 |
Q |
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| T |
37200484 |
cagcggatttacgat |
37200498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 37200603 - 37200672
Alignment:
| Q |
128 |
gaggaacgaccatcagtggagatacggtgtttgatggaatcggcgacggcggcggagtcgggggtgatgg |
197 |
Q |
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| T |
37200603 |
gaggaacgaccatcggtggcgagacggcgtttgatggaatcggcgacggcggcggagtcgggggtgatgg |
37200672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 26798234 - 26798345
Alignment:
| Q |
4 |
aatcacaacaccatcattaaatccattattttcactgcgtcgttgaactttattatccgaaatcgttaaattcggaagaagaacgaaagggtcatgcaat |
103 |
Q |
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|||||||||| |||||||||| || |||||||||| |||||||||||| | ||| |||||||||||||| |||||||||||||| |||||||| ||| || |
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| T |
26798234 |
aatcacaacatcatcattaaa-ccgttattttcaccgcgtcgttgaacgt-attctccgaaatcgttaatttcggaagaagaacaaaagggtcgtgcgat |
26798331 |
T |
|
| Q |
104 |
ttagcggcggattt |
117 |
Q |
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| T |
26798332 |
ttagcggcggattt |
26798345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 8395789 - 8395676
Alignment:
| Q |
4 |
aatcacaacaccatcattaaatccattattttcactgcgtcgttgaactttattatccgaaatcgttaaattcggaagaagaacgaaagggtcatgcaat |
103 |
Q |
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|||||||||| |||||||||| || |||||||||| |||||||||||| | ||| | |||||||||||| ||||||||||||| | ||||||| ||| || |
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| T |
8395789 |
aatcacaacatcatcattaaa-ccgttattttcaccgcgtcgttgaacgt-attcttcgaaatcgttaatttcggaagaagaatggaagggtcgtgcgat |
8395692 |
T |
|
| Q |
104 |
ttagcggcggatttac |
119 |
Q |
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|||||| ||||||||| |
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| T |
8395691 |
ttagcgacggatttac |
8395676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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