View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_59 (Length: 249)
Name: NF2810_high_59
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 24147213 - 24146972
Alignment:
| Q |
1 |
acaacgccactagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaaaatgttttgcaagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24147213 |
acaacgccactagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcac |
24147114 |
T |
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| Q |
101 |
ataaaatactacccccctctgttgtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaa |
200 |
Q |
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| T |
24147113 |
ataaaatactaccccactttgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaa |
24147015 |
T |
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| Q |
201 |
attcataagaacacagtagagcttgctttagaccctatgcttc |
243 |
Q |
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| T |
24147014 |
attcataagaacacagtagagcttgctttagaccccatgcttc |
24146972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 24152644 - 24152414
Alignment:
| Q |
9 |
actagctagaaggtgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaata |
108 |
Q |
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| T |
24152644 |
actagctagaaggtgaacaatattgtttgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaata |
24152545 |
T |
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| Q |
109 |
ctacccccctctgttgtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataa |
208 |
Q |
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| T |
24152544 |
ctaccccactatgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataa |
24152446 |
T |
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| Q |
209 |
gaacacagtagagcttgctttagaccctatgcttc |
243 |
Q |
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| T |
24152445 |
gaacac---agagcttgctttagaccctatgcttc |
24152414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 44006577 - 44006786
Alignment:
| Q |
24 |
agcaacattgtttgtttgtctccgaagaaaacttatctgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactacccccctctgtt |
123 |
Q |
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|||||||||||| ||||||||||||| ||||| | || |||||||||||||||||| || | ||| | ||||| ||||| ||||| |||| |||||| |
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| T |
44006577 |
agcaacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccc-tctgtt |
44006675 |
T |
|
| Q |
124 |
gtatgacttggtctccccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagct |
223 |
Q |
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| T |
44006676 |
ctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagct |
44006774 |
T |
|
| Q |
224 |
tgctttagaccc |
235 |
Q |
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||||||| |||| |
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| T |
44006775 |
tgctttaaaccc |
44006786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 21330785 - 21330832
Alignment:
| Q |
22 |
tgagcaacattgtttgtttgtctccgaagaaaacttatctgaaagttt |
69 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||| ||||||| |
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| T |
21330785 |
tgagcaacattatttatttgtctccgaataaaacttatcttaaagttt |
21330832 |
T |
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