View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_high_69 (Length: 239)

Name: NF2810_high_69
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_high_69
NF2810_high_69
[»] chr1 (6 HSPs)
chr1 (1-235)||(3362926-3363164)
chr1 (1-111)||(8236779-8236889)
chr1 (138-234)||(15421791-15421890)
chr1 (11-179)||(17739399-17739565)
chr1 (139-184)||(2130641-2130686)
chr1 (1-74)||(7839814-7839887)
[»] chr5 (2 HSPs)
chr5 (12-229)||(4237199-4237419)
chr5 (1-235)||(20685509-20685742)
[»] chr4 (6 HSPs)
chr4 (1-114)||(26492774-26492886)
chr4 (133-234)||(17295074-17295178)
chr4 (98-185)||(36709134-36709221)
chr4 (9-104)||(4743350-4743445)
chr4 (132-178)||(17465528-17465574)
chr4 (132-185)||(55268461-55268514)
[»] chr7 (5 HSPs)
chr7 (1-88)||(6531751-6531838)
chr7 (21-239)||(1751483-1751703)
chr7 (128-235)||(4873735-4873846)
chr7 (11-83)||(35103591-35103664)
chr7 (131-179)||(11243071-11243119)
[»] chr2 (1 HSPs)
chr2 (132-178)||(21511355-21511401)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3363164 - 3362926
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttct--tatagtct 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||  |||| |||    
T  3363164 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgttattacgacgaaccaataatccctagacgcttcttatataatct 3363065  T
Q  99 gaatttaaaccaaaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataa--ctgtgtgaaacaa 196  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||  || ||||||||||    
T  3363064 gaatttaaaccaaaaactgttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaaatcggtaattacaataactctctgtgaaacaa 3362965  T
Q  197 tatttatactactcgatagcaccgtacacttgcggattc 235  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3362964 tatttatactactcgatagcaccgtacacttgcggattc 3362926  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8236779 - 8236889
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctga 100  Q
    |||||||||||||||| ||||||| |||| |||||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||| ||||| |||||    
T  8236779 tagaaaatgaatttaacataagataaaaacataggcttggattgttagtgatttgttattacgacgagccaataatccctagacgctt-ttataatctga 8236877  T
Q  101 a-tttaaaccaa 111  Q
    | ||||||||||    
T  8236878 actttaaaccaa 8236889  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 15421791 - 15421890
Alignment:
Q  138 cttttcagctaatcacaattgaaaacaatatcggtaattacaataact--gtgtgaaacaatatttatactac-tcgatagcaccgtacacttgcggatt 234  Q
    ||||||||||||||||||||||||| || |||  ||||||||||||||   |||| |||||||||| |||||| | ||||  ||||| ||||||||||||    
T  15421791 cttttcagctaatcacaattgaaaagaaaatcaataattacaataactccatgtggaacaatatttttactactttgataaaaccgtgcacttgcggatt 15421890  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 17739399 - 17739565
Alignment:
Q  11 atttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaatttaaacca 110  Q
    ||||||| ||||| ||||||||||| || || |||||||||||||  ||||| ||||| |||  ||||||||| |||| ||||| ||| || |||| ||     
T  17739399 atttaatttaagaggaaaatataggtttggaatgttagtgatttgtcattacgacgaaccaacgatccctagatgctt-ttataatctaaaattaatcct 17739497  T
Q  111 aaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattaca 179  Q
    |||| |||||||  || || |||||  ||||| |||||||||||||| ||||  | ||| |||||||||    
T  17739498 aaaactgttgaatttctaa-acttatacttttaagctaatcacaattaaaaaggaaatcagtaattaca 17739565  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 2130641 - 2130686
Alignment:
Q  139 ttttcagctaatcacaattgaaaacaatatcggtaattacaataac 184  Q
    |||||||||||||||||||||||| || |||  |||||||||||||    
T  2130641 ttttcagctaatcacaattgaaaagaaaatcaataattacaataac 2130686  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7839814 - 7839887
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaata 74  Q
    |||||||||| |||||  |||||| ||||||| |||||  |||||| ||||||||||||||  ||||| |||||    
T  7839814 tagaaaatgagtttaacgtaagataaaaatatgggcttgaattgtttgtgatttgctattaagacgaaccaata 7839887  T

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Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 4237199 - 4237419
Alignment:
Q  12 tttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaatttaaacca- 110  Q
    ||||| ||||||| |||||||||||||  |||||| |||||||| | |||  ||||| ||||||||||||||||||| ||||| ||||||||| |||||     
T  4237199 tttaacataagataaaaatataggcttgaattgtttgtgatttgttcttaagacgaaccaataatccctagacgctt-ttataatctgaattttaaccaa 4237297  T
Q  111 -aaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataactgt--gtgaaacaatatttatacta 207  Q
     |||| |||||||  ||||||||||||| |||||| ||||| |  |||| |||| | ||||||||||||||||||| |  ||||||| |||||| |||||    
T  4237298 gaaaattgttgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaattacaataactctccgtgaaacgatatttttacta 4237397  T
Q  208 ctcgatagcaccgtacacttgc 229  Q
    || ||||| || |||| |||||    
T  4237398 cttgatagaactgtacgcttgc 4237419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20685509 - 20685742
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctga 100  Q
    |||||||||||||||| ||||||| |||||||||||||  ||||||||||||||| || ||  | ||| |||||||||||| |||||| ||||| | |||    
T  20685509 tagaaaatgaatttaacataagataaaaatataggcttgaattgttagtgatttgttaataagatgaaccaataatccctatacgctt-ttataatatga 20685607  T
Q  101 atttaaaccaaaaaa--tgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaata-tcggtaattacaataactgtgtgaaacaat 197  Q
    |||| |||||| |||  |||||||  || || |||| ||||   ||||||||||  ||||||||||| | | |||||||||||||||| |||| ||| ||    
T  20685608 attttaaccaagaaaactgttgaacttctaaaacttgatct---cagctaatcaacattgaaaacaaaaattggtaattacaataactctgtggaacgat 20685704  T
Q  198 atttatactactcgatagcaccgtacacttgcggattc 235  Q
    |||| ||||||| ||||| ||  ||  |||||||||||    
T  20685705 atttttactacttgatagaactatatgcttgcggattc 20685742  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26492886 - 26492774
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctga 100  Q
    |||||||||||||||| ||||||| ||||  ||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||| |||||    
T  26492886 tagaaaatgaatttaacataagataaaaacttaggctttgattgttagtgatttgttattacgacgaaccaataatccctagacgctt-ttataatctga 26492788  T
Q  101 atttaaaccaaaaa 114  Q
    ||||||| ||||||    
T  26492787 atttaaaacaaaaa 26492774  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 17295178 - 17295074
Alignment:
Q  133 ttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataactgtgtga--aacaatatttatactactcgat-agcaccgtacacttgc 229  Q
    |||||| ||||||||||||| |||||||||  | |||||||| |||||||||| | |||  |||||||||| ||||||||||| || ||||||| |||||    
T  17295178 ttaatcatttcagctaatcataattgaaaaagaaatcggtaagtacaataactctttgaggaacaatatttttactactcgataagaaccgtacgcttgc 17295079  T
Q  230 ggatt 234  Q
    |||||    
T  17295078 ggatt 17295074  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 36709221 - 36709134
Alignment:
Q  98 tgaatttaaaccaaaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataact 185  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||||| |||| |  ||||||||| | || | ||||||||||||||    
T  36709221 tgaatttaaaccaaaaattgttgaactttgaatacttaatcttttcagataattaacattgaaaacgaaattgataattacaataact 36709134  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 4743350 - 4743445
Alignment:
Q  9 gaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaattt 104  Q
    ||||||||| ||||| ||||||||||| || |||||| ||| |||||  ||||| | ||| |||||||||| |||||||| ||||  |||||||||    
T  4743350 gaatttaatttaagaggaaaatataggtttggattgtgagtaatttgtcattacgatgaagcaataatcccgagacgctttttattatctgaattt 4743445  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 17465528 - 17465574
Alignment:
Q  132 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattac 178  Q
    |||||||||||||||||||||  | ||||||||| ||||||||||||    
T  17465528 cttaatcttttcagctaatcatcactgaaaacaagatcggtaattac 17465574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 55268461 - 55268514
Alignment:
Q  132 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataact 185  Q
    ||||| |||||||||| |||||||||||||| || |||  ||||||||||||||    
T  55268461 cttaaacttttcagcttatcacaattgaaaagaaaatcaataattacaataact 55268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6531751 - 6531838
Alignment:
Q  1 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgctt 88  Q
    ||||||| |||| ||| |||||||||||| |||||||| |||||||||||||||| |||||  || || |||||||||||||||||||    
T  6531751 tagaaaacgaatctaaaataagatgaaaacataggcttggattgttagtgatttgttattatgacaaaccaataatccctagacgctt 6531838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 1751483 - 1751703
Alignment:
Q  21 agatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaatttaaaccaaaaaa-tgtt 119  Q
    |||| |||||| ||||||  ||||||  ||||||| |||||  || || |||||||||| | |||||| ||||| ||||||||| |||||| ||| | ||    
T  1751483 agataaaaatacaggcttaaattgtttatgatttgttattaagacaaaccaataatccccatacgctttttataatctgaattttaaccaagaaactatt 1751582  T
Q  120 gaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataa--ctgtgtgaaacaatatttatactactcgatagca 217  Q
      |  || || |||| |||||||| ||||||||  ||||||||| | |||||||||||||||||  || |||| ||| ||| || ||||||||||||| |    
T  1751583 cgacttctaa-acttgatcttttctgctaatcaacattgaaaacgaaatcggtaattacaataactctctgtggaacgatacttttactactcgatagaa 1751681  T
Q  218 ccgtacacttgcggattcatat 239  Q
    || ||| |||||||||||||||    
T  1751682 ccatacgcttgcggattcatat 1751703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 4873735 - 4873846
Alignment:
Q  128 aatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataa--ctgtgtgaaacaatat--ttatactactcgatagcaccgtac 223  Q
    |||||||||||||||||||||||||  ||||||||| | ||| |||||||||||||  || |||  ||| ||||  || |||||||| |||| |||||||    
T  4873735 aatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtagaacgatattcttgtactactcaatagaaccgtac 4873834  T
Q  224 acttgcggattc 235  Q
    ||||||||||||    
T  4873835 acttgcggattc 4873846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 35103664 - 35103591
Alignment:
Q  11 atttaatataagatgaaaatataggcttcgattgttagtgatttg-ctattaccacgaatcaataatccctaga 83  Q
    |||||| |||||||||||||||||||||  |||||||||||||||  |||||  ||||| ||||||||||||||    
T  35103664 atttaacataagatgaaaatataggcttgaattgttagtgatttgtttattaagacgaaccaataatccctaga 35103591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 11243071 - 11243119
Alignment:
Q  131 acttaatcttttcagctaatcacaattgaaaacaatatcggtaattaca 179  Q
    |||| ||||||||||||||||| |||| ||||||| |||| ||||||||    
T  11243071 acttgatcttttcagctaatcataattaaaaacaagatcgttaattaca 11243119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 21511401 - 21511355
Alignment:
Q  132 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattac 178  Q
    |||||||||||||||||| ||  ||||||||||| ||||||||||||    
T  21511401 cttaatcttttcagctaagcatcattgaaaacaagatcggtaattac 21511355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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