View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_high_73 (Length: 236)
Name: NF2810_high_73
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32068391 - 32068171
Alignment:
| Q |
1 |
aactaacaaatatgcgcgatcacgaataagtgatttcaacaaacaagcagcttcatatagtttaccaccactttgttcatcatcactggttagaatgaca |
100 |
Q |
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| T |
32068391 |
aactaacaaatatgcgcgatcacgaataagtgatttcaacaaacaagcagcttcatatagtttaccaccactttgttcatcatcactggttagaatgaca |
32068292 |
T |
|
| Q |
101 |
attccaaccgatttggaaactgctttatcgatcaagtctagtgcggattcgccacgtgtaagaatctggtcggagttgagttggagaatgagagtgggga |
200 |
Q |
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| T |
32068291 |
attccaaccgatttggaaaccgctttatcgatcaagtctagtgcggattcgccacgtgtaagaatctggtcggagttgagttggagaatgagagtgggga |
32068192 |
T |
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| Q |
201 |
ctttgagttcggggcgtttgt |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
32068191 |
ctctgagttcggggcgtttgt |
32068171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 43996735 - 43996789
Alignment:
| Q |
26 |
ataagtgatttcaacaaacaagcagcttc---atatagtttaccaccactttgtt |
77 |
Q |
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| T |
43996735 |
ataagtgatttcaacaaacaagcagcttcataatagagtttaccaccactttgtt |
43996789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 43996847 - 43996893
Alignment:
| Q |
131 |
atcaagtctagtgcggattcgccacgtgtaagaatctggtcggagtt |
177 |
Q |
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| T |
43996847 |
atcaagtctagtgcagattcgccacgtgtgagaatctcatcggagtt |
43996893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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