View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_high_8 (Length: 532)
Name: NF2810_high_8
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 200 - 519
Target Start/End: Original strand, 25466956 - 25467275
Alignment:
| Q |
200 |
gagtaccttgaactattagcttatacaaactgcagaaatcgtcgccattattggaactatcaacatcaaaatagaaaacgacggaagaaccttctagaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25466956 |
gagtaccttgaactattagcttatacaaactgcagaaatggtcgccattattggaactatcaacatcaaaatagaaaacgacggaagaaccttctagaac |
25467055 |
T |
|
| Q |
300 |
tgcacaaaacgacattgttagaaaattgaaagaagatcgaaagaagatcgcgtcgattgaaaggttacctttggcgatgcggtgtttatcggtgaggtcg |
399 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25467056 |
tgcacaaaaagacattgttagaaaattgaaagaagatcgaaagaagatcgcgtcgattgaacggttacctttggcgatgcggtgtttatcggtgaggtcg |
25467155 |
T |
|
| Q |
400 |
agatggaagtaagaagcgcgggaagaagagagagcttcagcgaggagagattcggagtggtgaaggttgagagagtgagtggaatcggcgattcggacga |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25467156 |
agatggaagtaagaagcgcgggaagaagagagagcttcagcgaggagagattcggagtggtgaaggttgagagagtgagtggaatcggcgattcggacga |
25467255 |
T |
|
| Q |
500 |
tccagttaccgagtttcaag |
519 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
25467256 |
tccagtttccgagtttcaag |
25467275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25466757 - 25466887
Alignment:
| Q |
1 |
cttaaagaaaatctcactttccacggatacgccaacggcttatctctatcaaacacaacatcagcagaactattgtatattaagcgtttcactttagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25466757 |
cttaaagaaaatctcactttccacggatacgccaacggtttatctctatcaaacacaacatcagcagaactattgtatattaagcgtttcactttagatt |
25466856 |
T |
|
| Q |
101 |
ctctgcaagcaataatcacattcttcgcacc |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25466857 |
ctctgcaagcaataatcacattcttcgcacc |
25466887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University