View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_low_10 (Length: 527)

Name: NF2810_low_10
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_low_10
NF2810_low_10
[»] chr8 (5 HSPs)
chr8 (117-506)||(1344355-1344744)
chr8 (117-488)||(1354819-1355189)
chr8 (130-207)||(10043378-10043455)
chr8 (10-57)||(1354159-1354206)
chr8 (49-117)||(1354066-1354137)
[»] chr3 (2 HSPs)
chr3 (77-286)||(24618637-24618846)
chr3 (1-81)||(24619123-24619203)
[»] chr1 (2 HSPs)
chr1 (117-375)||(29051806-29052064)
chr1 (1-117)||(29051305-29051421)
[»] chr7 (2 HSPs)
chr7 (148-204)||(13590862-13590918)
chr7 (211-302)||(13590644-13590735)
[»] chr6 (1 HSPs)
chr6 (320-364)||(34265359-34265403)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 117 - 506
Target Start/End: Complemental strand, 1344744 - 1344355
Alignment:
Q  117 ttgagaggacaccctaaatctaaagcagtttcatgatttcatcaatctagtccttagagaaattaacataacaatgatgaaaaacaaagtgactactaat 216  Q
    |||| |||| ||||||||| |||||||||||||||  ||||  ||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||    
T  1344744 ttgaaaggaaaccctaaatttaaagcagtttcatgccttcactaatctggtccttagagaaattaacataacaatgatcagaaacaaagtgattactaat 1344645  T
Q  217 tatgaattttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa 316  Q
    ||||||||||| |||||| ||| ||  ||||   ||||||||  | | |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  1344644 tatgaattttcaaattacatctagaggacttcaaaaatttgattagttttaacattgagaaaccaaatagtaacacactgacttcacaatcacaaggaaa 1344545  T
Q  317 ttgttgcatagttgaaatagtgataaagctattcaaaatttaaaaatgcttactctaccaaaacagatattgtcgagtgatcgacataaaatgagattat 416  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||     
T  1344544 ttgttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctaccaaaacagatattgtagagcgatcggcataaaatgagattac 1344445  T
Q  417 cgatcgagtagatagctcaagcactcatagaagtggaactttctaaaagatttacatgattctaatatttgaaatcatgcaccgtgttca 506  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  1344444 cgattaagtagatagctcaagcactcatagaagtggaactttctaaaagatttacgtcattctaatatttgaaatcatgcaccgtgttca 1344355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 117 - 488
Target Start/End: Original strand, 1354819 - 1355189
Alignment:
Q  117 ttgagaggacaccctaaatctaaagcagtttcatgatttcatcaatctagtccttagagaaattaacataacaatgatgaaaaacaaagtgactactaat 216  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| | |||||||    
T  1354819 ttgaaaggaaaccctaaatttaaagcagtttcatgatttcatcaatctggtccttagagaaattaacataacaatgatcagaaacaaagtaattactaat 1354918  T
Q  217 tatgaattttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa 316  Q
    ||||||||||| |||||| |||  |||||||   ||||||||| ||| | |||||| ||||||  || ||||||||| ||||||||||||||||||||||    
T  1354919 tatgaattttcaaattacatctaaaaaacttcacaaatttgagcattct-aacattaagaaactaaatagtaacacattgacttcacaatcacaaggaaa 1355017  T
Q  317 ttgttgcatagttgaaatagtgataaagctattcaaaatttaaaaatgcttactctaccaaaacagatattgtcgagtgatcgacataaaatgagattat 416  Q
    || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  1355018 ttcttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctaccaaaacagatattgtgaagtgatcgacataaaacgagattat 1355117  T
Q  417 cgatcgagtagatagctcaagcactcatagaagtggaactttctaaaagatttacatgattctaatatttga 488  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  1355118 cgattgagtagatagctcaagcactcatagaaatggaactttctaaaagatttacatgatcctaatatttga 1355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 10043378 - 10043455
Alignment:
Q  130 ctaaatctaaagcagtttcatgatttcatcaatctagtccttagagaaattaacataacaatgatgaaaaacaaagtg 207  Q
    |||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||| | ||||||||||    
T  10043378 ctaaatttaaagcagtttcattattttatcaatctggtccttagagaaattaacataacagtgatcagaaacaaagtg 10043455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 1354206 - 1354159
Alignment:
Q  10 cagaacaatttggttcctttttctaatgcaactttgaatggctgcaaa 57  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  1354206 cagatcaatttggttcatttttcttatgcaactttgaatggctgcaaa 1354159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 1354137 - 1354066
Alignment:
Q  49 ggctgcaaaatgactagctgtaaaaattgtactttttt---gggcaattaaacgttttaggacttgaatatt 117  Q
    ||||| |||||||||||||| |||||||||||||||||    ||||||| || ||||||||| |||||||||    
T  1354137 ggctgaaaaatgactagctgaaaaaattgtacttttttctgaggcaatttaaagttttaggatttgaatatt 1354066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 24618846 - 24618637
Alignment:
Q  77 gtacttttttgggcaattaaacgttttaggacttgaatatttgagaggacaccctaaatctaaagcagtttcatgatttcatcaatctagtccttagaga 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24618846 gtacttttttgggcaattaaacgttataggacttgaatatttgagaggacaccctaaatctaaagcagtttcatgatttcatcaatctagtccttagaga 24618747  T
Q  177 aattaacataacaatgatgaaaaacaaagtgactactaattatgaattttctaattacctctggaaaactttgtaaatttgagaattattaacattgaga 276  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24618746 aattaacataacaatgatcagaaacaaagtgactactaattatgaattttctaattacctctagaaaactttgtaaatttgagaattattaacattgaga 24618647  T
Q  277 aaccgaaaag 286  Q
    ||||||||||    
T  24618646 aaccgaaaag 24618637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24619203 - 24619123
Alignment:
Q  1 tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgtaaaaattgtact 81  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24619203 tattaggaacagagcaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgaaaaaattgtact 24619123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 117 - 375
Target Start/End: Original strand, 29051806 - 29052064
Alignment:
Q  117 ttgagaggacaccctaaatctaaagcagtttcatgatttcatcaatctagtccttagagaaattaacataacaatgatgaaaaacaaagtgactactaat 216  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  29051806 ttgaaaggacacccaaaatctaaagcactttcatgatttcatcaatctggtccttagagaaattaacataacaatgatcagaaacaaagtgactactaat 29051905  T
Q  217 tatgaattttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa 316  Q
    ||||||||||| |||||| | | ||||||||   ||||||||| |||  ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  29051906 tatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaacacactgacttcacaatcacaaagaaa 29052005  T
Q  317 ttgttgcatagttgaaatagtgataaagctattcaaaatttaaaaatgcttactctacc 375  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29052006 ttgttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctacc 29052064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29051305 - 29051421
Alignment:
Q  1 tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgtaaaaattgtacttttttgggcaattaaacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  29051305 tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgaaaaaattctacttttttgggcacttaaacgt 29051404  T
Q  101 tttaggacttgaatatt 117  Q
    |||||||||||||||||    
T  29051405 tttaggacttgaatatt 29051421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 13590918 - 13590862
Alignment:
Q  148 catgatttcatcaatctagtccttagagaaattaacataacaatgatgaaaaacaaa 204  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| || | |||||||    
T  13590918 catgatttcgtcaatctggtccttagagaaattagcataacaataatcagaaacaaa 13590862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 13590735 - 13590644
Alignment:
Q  211 actaattatgaattttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttca 302  Q
    |||||| |||||||||| |||||| |||  |||||| |  ||||||||| ||| ||| || ||||||||| || ||||||||||||| ||||    
T  13590735 actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaacacactgaattca 13590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 34265359 - 34265403
Alignment:
Q  320 ttgcatagttgaaatagtgataaagctattcaaaatttaaaaatg 364  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||||||    
T  34265359 ttgcatagttgaaatagggatgaagcaattcaaaattttaaaatg 34265403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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