View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_20 (Length: 452)
Name: NF2810_low_20
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_20 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 127 - 448
Target Start/End: Complemental strand, 46649090 - 46648770
Alignment:
| Q |
127 |
atcctgaaccttcaaccgcgaaaaactgccatttctgtcaggataaccgatcagaaagaacaaccggttaaatttgtaaatttctgaggaatacattact |
226 |
Q |
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| T |
46649090 |
atcctgaaccttcaaccgcgaaaaactgccatttctgacaggataaccaatcagaaagaacaactg-ttaaatttgtaaatttctgaggaatacattact |
46648992 |
T |
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| Q |
227 |
cgagaacgtttgggcgcgatgataaccaatccctttgattctaacaattcattttttctttagatggttaacacaattcaaatatatgattaattacgtt |
326 |
Q |
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| T |
46648991 |
agagaacgtttgggcgcaatgataaccaatccctttggttctaacaattcattttttctttagatggttaacacaattcaaatatatggttaattacgtt |
46648892 |
T |
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| Q |
327 |
taattgatggttagtgaatatgacaagatatttgcacgccattaattgtagatcataaacaatataatgtattaactgaataaaccaaaaaatttcacgc |
426 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
46648891 |
taattgatggttaatgaatatggcaagatatttgcacgccatgaattgtagatcataaacaatataatgtattaactgaataaaccaaaaaaatttacgc |
46648792 |
T |
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| Q |
427 |
cattaaggcattaactatatac |
448 |
Q |
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| T |
46648791 |
cattaaggcattaactatatac |
46648770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 46651167 - 46651057
Alignment:
| Q |
19 |
tattctacacctaatgacgatgaagtggtcattctaaccaaagcaaaatatgaatggttgttgcagaggcttgaccgagctgataagcttgaagggaaga |
118 |
Q |
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| T |
46651167 |
tattctgcacctaatgacgatgaagtggtcattatgaccaaagaaaaatatgaatggttgttgcagaggcttgaccaggctgataagcttgaagggaaga |
46651068 |
T |
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| Q |
119 |
ttttacaaatc |
129 |
Q |
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| T |
46651067 |
ttttacaaatc |
46651057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 121446 - 121382
Alignment:
| Q |
289 |
gatggttaacacaattcaaatatatgattaattacgtttaattgatggttagtgaatatgacaag |
353 |
Q |
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| T |
121446 |
gatggttaatgcaattcaaatatatgattaattacatttaataaatggttgatgaatataacaag |
121382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 460947 - 460885
Alignment:
| Q |
285 |
tttagatggttaacacaattcaaatatatgattaattacgtttaattgatggttagtgaatat |
347 |
Q |
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| T |
460947 |
tttagatggttaatacaatttaaatatatgactaattatgtttagtagatgattaatgaatat |
460885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 32511390 - 32511325
Alignment:
| Q |
287 |
tagatggttaacacaattcaaatatatgattaattacgtttaattgatggttagtgaatatgacaag |
353 |
Q |
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| T |
32511390 |
tagatggttaacacaattcaaacatatggttaattatgttt-agtgatggctactgaatataacaag |
32511325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 1519970 - 1519913
Alignment:
| Q |
289 |
gatggttaacacaattcaaatatatgattaattacgtttaattgatggttagtgaata |
346 |
Q |
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| T |
1519970 |
gatggttagcacaattcaaatatgtggttaatcatgttcaattgatggttaatgaata |
1519913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 282375 - 282323
Alignment:
| Q |
287 |
tagatggttaacacaattcaaatatatgattaattacgtttaattgatggtta |
339 |
Q |
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| T |
282375 |
tagatggttaacacaatttaaatatatggttagttatgtttagtggatggtta |
282323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 1898666 - 1898629
Alignment:
| Q |
288 |
agatggttaacacaattcaaatatatgattaattacgt |
325 |
Q |
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| T |
1898666 |
agatggttaacacaattcaaatatgtgcttaattacgt |
1898629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 31562764 - 31562841
Alignment:
| Q |
273 |
attcattttttctttagatggttaacacaattcaaatatatgattaattacgtttaattgatggttagtgaatatgacaa |
352 |
Q |
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| T |
31562764 |
attcatttcttcattacatggttaacacagttaaaatata--attaattacgttcaatggatgattaatgaatataacaa |
31562841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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