View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_21 (Length: 443)
Name: NF2810_low_21
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 24619584 - 24619325
Alignment:
| Q |
1 |
tgataataatcaacagttaggtcgggaagttggttctgaccaatgattttttcgactaggtttcaactcggattctcttaaacgatggaagggcaaaagt |
100 |
Q |
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| T |
24619584 |
tgataataatcaacaatttggctgggaggttggttttgaccaatgattttttcgactaggttttaattcggattctcttaaacgatggaagggcaaaagt |
24619485 |
T |
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| Q |
101 |
gaaataaattatcccaatattatctaaattgaatattacactaaaatcaaccaaaaagtcaaaataaataaaagtatgaatttgaactaagaactggtta |
200 |
Q |
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| T |
24619484 |
gaaataaatgatcccaatattatctaaattgaatactccactaaaatcaaccaaaaagtcaagataaataaaagtatgaatttgaactaagaactggtta |
24619385 |
T |
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| Q |
201 |
catctacagcaatcagtcaatggctaaagtttcttcatgtgaaactaaaataatgaacta |
260 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24619384 |
catctagagcaatcaatcaatggctaaagtttcttcatgtgaaactaaaataatgaacta |
24619325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 24619203 - 24619123
Alignment:
| Q |
259 |
tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgtaaaaattgtact |
339 |
Q |
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| T |
24619203 |
tattaggaacagagcaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgaaaaaattgtact |
24619123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 427
Target Start/End: Original strand, 17382916 - 17383033
Alignment:
| Q |
308 |
gctgcaaaatgactagctgtaaaaattgtacttttttg---ggcaattaaacgttttacgacttgaatattattctctaatgtgaggatacatagagaaa |
404 |
Q |
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| T |
17382916 |
gctgaaaaatgagtagctgaaaaaactgtacttttttgtgaggcaattaaatggtttagga----aatattattctc-aatttgaggatatatagagaaa |
17383010 |
T |
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| Q |
405 |
aatgtgaatggaaggcttgtgta |
427 |
Q |
| |
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| T |
17383011 |
aacatgaatggtaggcttgtgta |
17383033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 24618846 - 24618806
Alignment:
| Q |
335 |
gtacttttttgggcaattaaacgttttacgacttgaatatt |
375 |
Q |
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| T |
24618846 |
gtacttttttgggcaattaaacgttataggacttgaatatt |
24618806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 259 - 427
Target Start/End: Original strand, 29051305 - 29051473
Alignment:
| Q |
259 |
tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgtaaaaattgtacttttttgggcaattaaacgt |
358 |
Q |
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| T |
29051305 |
tattaggaacagaacaatttggttcctttttctaatgcaactttgaatggctgcaaaatgactagctgaaaaaattctacttttttgggcacttaaacgt |
29051404 |
T |
|
| Q |
359 |
tttacgacttgaatattattctctaatgtgaggatacatagagaaaaatgtgaatggaaggcttgtgta |
427 |
Q |
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| T |
29051405 |
tttaggacttgaatattattctctaatgtgaggatacatagagaaaaatgtgaatggaaggcttgtgta |
29051473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 29051074 - 29051174
Alignment:
| Q |
154 |
aaaagtcaaaataaataaaagtatgaatttgaactaagaactggttacatctacagcaatcagtcaatggctaaagtttcttcatgtgaaactaaaataa |
253 |
Q |
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| T |
29051074 |
aaaagccaagataaataaaagtatgaatttgaactaagaagtggttacttctatagcaatcagtcaatggctaaagttttttcatatgaaactaaaataa |
29051173 |
T |
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| Q |
254 |
t |
254 |
Q |
| |
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| T |
29051174 |
t |
29051174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 1345072 - 1344916
Alignment:
| Q |
35 |
tctgaccaatgattttttcgactaggtttcaactcggattctcttaaacgatggaagggcaaaagtgaaataaattatcccaatattatctaaattgaat |
134 |
Q |
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|||||||||||||| || ||| ||| || ||| ||||| |||||| ||||||| ||| ||||||||| |||| ||||| || ||||||||||||||| |
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| T |
1345072 |
tctgaccaatgattattccgattagattcgtactaggattttcttaatcgatggatgggaaaaagtgaattaaaagatccctatgttatctaaattgaat |
1344973 |
T |
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| Q |
135 |
attacactaaaatcaaccaaaaagtcaaaataaataaaagtatgaatttgaactaagaa |
193 |
Q |
| |
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||| ||||||||| |||| ||||| ||| |||||||||| ||||||||| ||||||||| |
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| T |
1344972 |
attccactaaaataaacc-aaaagccaagataaataaaaatatgaattt-aactaagaa |
1344916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 1354206 - 1354159
Alignment:
| Q |
268 |
cagaacaatttggttcctttttctaatgcaactttgaatggctgcaaa |
315 |
Q |
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|||| ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
1354206 |
cagatcaatttggttcatttttcttatgcaactttgaatggctgcaaa |
1354159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 1354137 - 1354058
Alignment:
| Q |
307 |
ggctgcaaaatgactagctgtaaaaattgtactttttt---gggcaattaaacgttttacgacttgaatattattctcta |
383 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| ||||||| || |||||| || |||||||||| |||||| |
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| T |
1354137 |
ggctgaaaaatgactagctgaaaaaattgtacttttttctgaggcaatttaaagttttaggatttgaatattaatctcta |
1354058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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