View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_24 (Length: 431)
Name: NF2810_low_24
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_24 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 198 - 418
Target Start/End: Original strand, 28935509 - 28935730
Alignment:
| Q |
198 |
taaatatgatctagttttttaatacactatctatgaatcttagaattgtggtccaaaccttaggagagtattgtctaagtttgatatttgcttgcatata |
297 |
Q |
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| T |
28935509 |
taaatatgatctagttttttaatacactatctatgaatcttagaattgtggtccaaaccttaggagagtatcgtctaagtttgatatttgcttgcatata |
28935608 |
T |
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| Q |
298 |
tacagagagcatgtatcaaatgagatgagtgattattctgagcgatgagaagattcaatttcaatcctcggatgaatattaat-ggttcaaattaattat |
396 |
Q |
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| T |
28935609 |
tatagagaacatgtatcaaataagaggagtggttattgtgagcgatgagaggattcaatttcaatccttagatgaatattaatgggttcaaattaattat |
28935708 |
T |
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| Q |
397 |
tgttaaaatactctcttccttc |
418 |
Q |
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| T |
28935709 |
tgttaaaatactctattccttc |
28935730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 28935296 - 28935460
Alignment:
| Q |
18 |
gttattgcgtcaacagttaagttaaaaaatatttatgtgttgcacctaagcctatacttttattttttccatcataatgttgttcatttctataacactt |
117 |
Q |
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| T |
28935296 |
gttattgcgtcaacagttaagttaaaaaataattatgcgttgcacctaagcctatacttttattttttccatcataatgttgttcatttctataacacta |
28935395 |
T |
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| Q |
118 |
tagtgtgtgtgtattctacctttcaatattttcgttgccttagaaatgtgttaatcatattatgc |
182 |
Q |
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| T |
28935396 |
tagtgtgtgtgtattctacctttcaatattttcattggcttagaaatgtgttaatcatattatgc |
28935460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 14929 - 14878
Alignment:
| Q |
367 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttc |
418 |
Q |
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| T |
14929 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttc |
14878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 54999877 - 54999928
Alignment:
| Q |
367 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttc |
418 |
Q |
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| T |
54999877 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttc |
54999928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 45060519 - 45060468
Alignment:
| Q |
367 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttc |
418 |
Q |
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| T |
45060519 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttc |
45060468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 45081549 - 45081600
Alignment:
| Q |
367 |
ggatgaatattaatggttcaaattaattattgttaaaatactctcttccttc |
418 |
Q |
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| T |
45081549 |
ggatgaatattaatggttcagattaattattgttaaaatactctctttcttc |
45081600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 6412747 - 6412680
Alignment:
| Q |
344 |
gagaagattcaatttcaatcctcggatgaatattaatggttcaaattaattattgttaaaatactctc |
411 |
Q |
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| T |
6412747 |
gagaggattcaatcttaacccttggatgaatattaatggttcaaattaattactgttaaagtactctc |
6412680 |
T |
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