View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_low_25 (Length: 431)
Name: NF2810_low_25
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 14334537 - 14334379
Alignment:
| Q |
256 |
gcaatgtagctacatcaaacaaaatgaaatcttatttgccaatggctgctcatgcagaaccatgagcactgccacaaataaa-gctaaacttctaaatat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14334537 |
gcaatgtagctacatcaaacaaaatgaaatcttatttgccaatggctgctcatgtagaaccatgagcactgccacaaataaaggctaaacttctaaatat |
14334438 |
T |
|
| Q |
355 |
gcctcaagtatgagcaaacgtacacaaaataaatactttgccagttctaaagtttaact |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14334437 |
gcctcaagtatgagcaaacgtacacaaaataaatactttgccaattctaaagtttaact |
14334379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 14334776 - 14334601
Alignment:
| Q |
11 |
cacagattaaaccaattatggtagacacaaatggttagaccctcaccttacaccaactctgacttgagttctaatcttttattttgtaattgataaatta |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14334776 |
cacagattaaaccaattatgatagacacaaatggttagaccctcaccttacaccaactctgacttgagttctaatcttttattttgtaattgataaatta |
14334677 |
T |
|
| Q |
111 |
tgataagttacacttacacgtaaatttcattctaaattcttgatgagattgacagttttctctaacctcccacctcttaatc |
192 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14334676 |
tgataagttacact------taaatttcattggaaattcttgatgagattgacatttttctctaacttcccacctcttaatc |
14334601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University