View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_28 (Length: 405)
Name: NF2810_low_28
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 44 - 258
Target Start/End: Original strand, 11100125 - 11100339
Alignment:
| Q |
44 |
gaaatggcggcaacagtgccaccaccacctctagtagcatctaggagtgaagaaatggcaatcatgggtcatggctatgttgggatacctattaataatg |
143 |
Q |
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| T |
11100125 |
gaaatcgcggcaacagtaccaacgccacctctagcagcatctaggagtgaagaaatggcaattatgggtgatggccatgttgggatacctattaataatg |
11100224 |
T |
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| Q |
144 |
atgacattatgcaaagtcaattattgatggactcaatggtggctgataatctgcaagagacagtgccatttggtgagctcaattctggagtttggcctga |
243 |
Q |
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| T |
11100225 |
atgacattatgcaaagacaattattgatggactcaatggtggctggtaatgtgacagggacagtgccatttggtgaggtcaattctggagtttggcctga |
11100324 |
T |
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| Q |
244 |
tttactaccttgaag |
258 |
Q |
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|||| |||||||||| |
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| T |
11100325 |
tttattaccttgaag |
11100339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11106946 - 11107068
Alignment:
| Q |
1 |
tgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatggcggcaacagtgccaccaccacctctagtagcatctaggagtgaagaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
11106946 |
tgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatggcggcaacagtgccaccaccacctctagcaccatctaggagtgaagaaatg |
11107045 |
T |
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| Q |
101 |
gcaatcatgggtcatggctatgt |
123 |
Q |
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| T |
11107046 |
gcaattatgggtcatggccatgt |
11107068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 10987322 - 10987462
Alignment:
| Q |
132 |
ctattaataatgatgacattatgcaaagtcaattattgatggactcaatggtggctgataatctgcaagagacagtgccatttggtgagctcaattctgg |
231 |
Q |
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| T |
10987322 |
ctattaataatgatgacattatgcaaagtcaattattgatggactcaatggtggctggtaatgtgacagagacagtgccatttggtgaggtcaattctgg |
10987421 |
T |
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| Q |
232 |
agtttggcctgatttactaccttgaagaaaatcatgtattt |
272 |
Q |
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| T |
10987422 |
agtctggtctgatttacttccttgaaagaaatcatgtattt |
10987462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 11107074 - 11107164
Alignment:
| Q |
168 |
tgatggactcaatggtggctgataatctgcaagagacagtgccatttggtgagctcaattctggagtttggcctgatttactaccttgaag |
258 |
Q |
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| T |
11107074 |
tgatggactcaatggtggctggtaatctgcaagggacagtgccatttggtgaggtcaattctggagtttggcctcatttattaccttgaag |
11107164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10987236 - 10987307
Alignment:
| Q |
1 |
tgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatggcggcaacagtgccaccaccacc |
72 |
Q |
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| T |
10987236 |
tgatcaaaatcaaatcatggctattcaaaacaaagtccaactcgaaatggcggcaacagtaccaccaccacc |
10987307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 9894860 - 9894793
Alignment:
| Q |
96 |
aaatggcaatcatgggtcatggctatgttgggatacctattaataatgatgacattatgcaaagtcaa |
163 |
Q |
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| T |
9894860 |
aaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaa |
9894793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 11108681 - 11108734
Alignment:
| Q |
91 |
tgaagaaatggcaatcatgggtcatggctatgttgggatacctattaataatga |
144 |
Q |
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| T |
11108681 |
tgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatga |
11108734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 13308724 - 13308800
Alignment:
| Q |
92 |
gaagaaatggcaatcatgggtcatggctatgttgggatacctattaataatgatgacattatgcaaagtcaattatt |
168 |
Q |
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| T |
13308724 |
gaagaaatggcaatgatgggccatgaccattttgggataactatgagcaatggtgacatcatgcaaagacaattatt |
13308800 |
T |
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