View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_29 (Length: 401)
Name: NF2810_low_29
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 53298631 - 53299010
Alignment:
| Q |
22 |
tagtgctcatttaatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactgctaatcattatcccagtatatttcatcaatataag |
121 |
Q |
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| T |
53298631 |
tagtgctcatttaatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactactaatcattatcccagtatatttcatcaatgtaag |
53298730 |
T |
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| Q |
122 |
caacatactggtatctcattgatcctagctggggtcatatattgatattgttgcagacaatcgatacaactaattaatgatttgagatatatttggaagt |
221 |
Q |
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| T |
53298731 |
caacatactggtatctcattgatcctagctggggtcatatattgatattgttgcagacaattgatacaactaattaatgatttgagatatatttggaagt |
53298830 |
T |
|
| Q |
222 |
ggagattacgaattcagatttgtgtatgctctgttaatttaaagaagtcatggaattcgcttaaaaatagcatttcatggcattnnnnnnnggtacaggt |
321 |
Q |
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| T |
53298831 |
ggagattacgaattcagatttgtgtatgctctgttaatttaaagaagtcatggaattcgcttaaaaatagcatttcatggcattaaaaaaaggtaaaggt |
53298930 |
T |
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| Q |
322 |
cgtgctttgtttgtctgaccaataaatgacttgaactagataatgaaat---ataatcaagcctctattataagaataat |
398 |
Q |
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| T |
53298931 |
cgtgctttgtttgtctgaccaataaatgacttgaactagataatgaaatataataatcaagcctccattataagaataat |
53299010 |
T |
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