View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_36 (Length: 367)
Name: NF2810_low_36
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 46484885 - 46484545
Alignment:
| Q |
10 |
attattcttaggctccgttaattttttaatttaaaagtataatcaatgaaaaatatttctcttaggctcccttaatgtcaaaaagaaaagatatagcatg |
109 |
Q |
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| T |
46484885 |
attatttttaggctccgttaattttttaatttaaaagtataatcaatgaaaaatatttctcttaggctcccttaatgtcaaaaagaaaagatatagcatg |
46484786 |
T |
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| Q |
110 |
tctaatgttagtctcttaagatataaaagaaggtttttgccttttcgtgtattgttcaagtttaatttgaagtaagtagtgtatagcatcacgaaacatc |
209 |
Q |
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| T |
46484785 |
tctaatgttagtctcttaagatataaaagaaggtttttgccttttcgtgtattgttcaagtttaatttgaagtaagtagtgtatagcatcacgaaacatc |
46484686 |
T |
|
| Q |
210 |
atactgaaaacgttaggtttggtgctttaaaaagaggtaacgtctatggtgcacaagtttactaggtctttcacaatgcataaacnnnnnnnacaccatt |
309 |
Q |
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| T |
46484685 |
atactgaaaacgttaggtttggtgctttaaaaagaggtaacgtctatggtgtacaagtttactaggtctttcacaatgcaaaaactttttttacaccatt |
46484586 |
T |
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| Q |
310 |
agatatgaataagttatgccaaattaatgacacacgctata |
350 |
Q |
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| T |
46484585 |
agatatgaataagttatgccaaatttatgacacacgctata |
46484545 |
T |
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