View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_40 (Length: 343)
Name: NF2810_low_40
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 34397809 - 34397506
Alignment:
| Q |
21 |
agcacagataactcagattaaagacgtatccagtgtttagaatgtgacatagtcgacaacgagacacaatactgacacatgtatttacattcaatttttg |
120 |
Q |
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| T |
34397809 |
agcacagataactcagattaaagacgtatccagtgtttagaatgtgacatagtcgacaacgaaacacaatactgacacatgtatttacattcaatttttg |
34397710 |
T |
|
| Q |
121 |
aaatattatcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattaca |
220 |
Q |
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| T |
34397709 |
aaatattatcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattaca |
34397610 |
T |
|
| Q |
221 |
tt-ttttcgtgttaatttttaatcgtacaagcatagtgttaattaaaccatgtgagtacttacctctacctggcctcttccagctgctgaatgcaagaca |
319 |
Q |
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| T |
34397609 |
tttttttcgtgttaatttttaatcgtacaagcatagtgttaattaaaccatgtgagtacttacctctacctggcctcttccagctgctgaatgcaagaca |
34397510 |
T |
|
| Q |
320 |
gtac |
323 |
Q |
| |
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|||| |
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| T |
34397509 |
gtac |
34397506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 40583972 - 40584004
Alignment:
| Q |
83 |
gacacaatactgacacatgtatttacattcaat |
115 |
Q |
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| T |
40583972 |
gacacaatactgacacatgtgtttacattcaat |
40584004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 40876338 - 40876374
Alignment:
| Q |
83 |
gacacaatactgacacatgt-atttacattcaatttt |
118 |
Q |
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| T |
40876338 |
gacacaatactgacacatgtgatttacattcaatttt |
40876374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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