View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_42 (Length: 326)
Name: NF2810_low_42
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 20816291 - 20816613
Alignment:
| Q |
4 |
atgtcgaagaatatccaatgaagtttcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
103 |
Q |
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|||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816291 |
atgtcgcaaaatatccaatgaagttgcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
20816390 |
T |
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| Q |
104 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcg |
203 |
Q |
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| T |
20816391 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatca |
20816490 |
T |
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| Q |
204 |
atggtatagtctatgttgttgaccctggattggctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816491 |
atggtatagtctatgttgttgaccctggattggctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggc |
20816590 |
T |
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| Q |
304 |
tagtgcggttcagagatctgggc |
326 |
Q |
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||||||||||||||||||||||| |
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| T |
20816591 |
tagtgcggttcagagatctgggc |
20816613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 37 - 309
Target Start/End: Complemental strand, 38779821 - 38779549
Alignment:
| Q |
37 |
gggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttaga |
136 |
Q |
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| T |
38779821 |
gggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctccacctccagttaag |
38779722 |
T |
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| Q |
137 |
gagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgaccctggattgg |
236 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||| |||||||| | |
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| T |
38779721 |
gagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttattgatcctggatttg |
38779622 |
T |
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| Q |
237 |
ctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctagtgc |
309 |
Q |
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| T |
38779621 |
ctaagcagaaggtctataaccctcgagttcgtgttgagtctttgttggtgtctccaatatcaaaagctagtgc |
38779549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 46 - 309
Target Start/End: Complemental strand, 33388771 - 33388508
Alignment:
| Q |
46 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
145 |
Q |
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|||||||||||||||||| || | |||||||||| |||||||| |||||||| || | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
33388771 |
ggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
33388672 |
T |
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| Q |
146 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgaccctggattggctaagcaga |
245 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| ||||||||||||| || ||||||| |
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| T |
33388671 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatttgccaagcaga |
33388572 |
T |
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| Q |
246 |
aggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctagtgc |
309 |
Q |
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|||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33388571 |
aggtttataatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgc |
33388508 |
T |
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