View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_low_44 (Length: 322)

Name: NF2810_low_44
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_low_44
NF2810_low_44
[»] chr1 (2 HSPs)
chr1 (78-311)||(4685351-4685584)
chr1 (78-142)||(4612023-4612087)
[»] chr5 (1 HSPs)
chr5 (78-198)||(5113169-5113289)
[»] chr4 (3 HSPs)
chr4 (78-216)||(53557003-53557141)
chr4 (78-192)||(40254566-40254680)
chr4 (78-198)||(21173503-21173623)
[»] chr2 (1 HSPs)
chr2 (78-208)||(40820104-40820234)
[»] chr3 (1 HSPs)
chr3 (89-215)||(47846978-47847104)
[»] chr7 (1 HSPs)
chr7 (78-214)||(41208777-41208913)
[»] chr6 (1 HSPs)
chr6 (78-130)||(34357172-34357224)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 311
Target Start/End: Original strand, 4685351 - 4685584
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685351 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 4685450  T
Q  178 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttcnnnnnnncct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  4685451 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttctttttttcct 4685550  T
Q  278 tgataaatttgttactcgtccactatatcttcat 311  Q
    ||||||||||||||||||||||||||||||||||    
T  4685551 tgataaatttgttactcgtccactatatcttcat 4685584  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 4612087 - 4612023
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagat 142  Q
    |||| |||||||||||||||||||||| ||| || |||| ||| ||||||||||| || ||||||    
T  4612087 tgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat 4612023  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 5113169 - 5113289
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    |||| ||||||||||| ||||||||||| || || || |||||||||||||| || ||||||||| |||||||||| ||||||||||||||| |||||||    
T  5113169 tgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggtac 5113268  T
Q  178 tggtggtaactggattgctct 198  Q
    |||||| || |||||||||||    
T  5113269 tggtggaaattggattgctct 5113289  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 53557003 - 53557141
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    ||||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||| |||  | |||| ||    
T  53557003 tgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaac 53557102  T
Q  178 tggtggtaactggattgctctcccacaaaaaattggtaa 216  Q
    ||| || || ||||||||||| || ||||||||||||||    
T  53557103 tggaggaaattggattgctcttcctcaaaaaattggtaa 53557141  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 40254680 - 40254566
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    |||| ||||||||||||||||||||||| || || |||| |||||||||||| || |||||||| || ||||||||| |||| ||  |||||||||||||    
T  40254680 tggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaagactccaaactcaaagcttatattcaacaacatggtac 40254581  T
Q  178 tggtggtaactggat 192  Q
     ||||||||||||||    
T  40254580 aggtggtaactggat 40254566  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 21173503 - 21173623
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    |||| |||||||| |||||||||||| |||  || |||| |||||||||||| |||||||||||||| || || |||  |||||||||  ||||||| ||    
T  21173503 tgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagattcaaagcttaaagattacatagagaaacatggcac 21173602  T
Q  178 tggtggtaactggattgctct 198  Q
    |||||| || |||||| ||||    
T  21173603 tggtggaaattggatttctct 21173623  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 40820234 - 40820104
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    |||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| | || ||||||   || |||||| | ||||| ||    
T  40820234 tgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaac 40820135  T
Q  178 tggtggtaactggattgctctcccacaaaaa 208  Q
    |||||| || |||||| |||| || ||||||    
T  40820134 tggtggaaattggatttctcttcctcaaaaa 40820104  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 47847104 - 47846978
Alignment:
Q  89 ccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtactggtggtaact 188  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||   || |||||||| |||||  || | ||||| || ||||||||||    
T  47847104 ccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagatgacaagctcaaatcctacatccaagagcatggaaccggtggtaact 47847005  T
Q  189 ggattgctctcccacaaaaaattggta 215  Q
    ||||  || | |||||||| |||||||    
T  47847004 ggatcactttgccacaaaagattggta 47846978  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 41208913 - 41208777
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 177  Q
    |||| ||| ||||||| ||||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||    ||||||||  ||||||| ||    
T  41208913 tgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaacatggaac 41208814  T
Q  178 tggtggtaactggattgctctcccacaaaaaattggt 214  Q
    ||| || ||||||||| |||| ||| ||||| |||||    
T  41208813 tggaggaaactggattactctgccaaaaaaagttggt 41208777  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 34357172 - 34357224
Alignment:
Q  78 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtct 130  Q
    ||||||| ||||| |||||||||||| |||| ||||| | |||||||||||||    
T  34357172 tgggtagggctccatgttgtgacaaatcaaaagtgaaaagaggtccatggtct 34357224  T

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