View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_45 (Length: 313)
Name: NF2810_low_45
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 37600379 - 37600086
Alignment:
| Q |
9 |
gagtaattgacatcaaagataacaactagccaa------ccccgatgaggaactctttgatttgagagtttagtttgattaggtgagtagatatatgatt |
102 |
Q |
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| T |
37600379 |
gagtaatagacatcaaagataacaactagccaagaaaatccccgatgagggactctttgatttgagagtttagtttgattaggtgagtagatatatgatt |
37600280 |
T |
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| Q |
103 |
ttaggtgagcaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcctgtatactcacataaagat |
202 |
Q |
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| T |
37600279 |
ttaggtgagtaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcttgtatactcacataaagat |
37600180 |
T |
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| Q |
203 |
ccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactataaatattttcttcatctcactattatacc |
296 |
Q |
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| T |
37600179 |
ccttttccaaagatatatgatttcttgctacgaatcaccatttcatttgtataaattgacactacaaatattttcttcatctcactattatacc |
37600086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 37606516 - 37606415
Alignment:
| Q |
178 |
ctctcctgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactataaatattttc |
277 |
Q |
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| T |
37606516 |
ctctcttgcatacccacatatagatccttctccaaagatatatgatttcttgctaccaatctccattgcatttgtataaattgatactacaaatattttc |
37606417 |
T |
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| Q |
278 |
tt |
279 |
Q |
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|| |
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| T |
37606416 |
tt |
37606415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 34751057 - 34750991
Alignment:
| Q |
196 |
taaagatccttttcc-aaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattga |
261 |
Q |
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| T |
34751057 |
taaagatccttttcccaaagatatatgatttcttgctaccaatctccatagcatttgtataaattga |
34750991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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