View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_47 (Length: 311)
Name: NF2810_low_47
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 4091327 - 4091039
Alignment:
| Q |
16 |
cacaaacaatattgcagctgtaaaaacacatgctagaatggaaatccttcctcttggtctcaacaaaatattctcaaggagttccatcaacaagccaact |
115 |
Q |
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| T |
4091327 |
cacaaacaatattgcagctgtaaaaacacatgctagaatggaaatccttcctcttggtctcaacaaaatattctcaaggagttccatcaacaagccaact |
4091228 |
T |
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| Q |
116 |
gaaactttcatatctggcaatccatcaccatctccatctttttcacaaattaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaag |
215 |
Q |
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| T |
4091227 |
gaaactttcatatctggcaatccatcaccatctccatctttttcacaaatttggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaag |
4091128 |
T |
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| Q |
216 |
ctttgtcaaggtaggaaatcggcttctcaattagtttttccaaaaggcctctcttttcaaaatgagaactcattgagcagttcatctca |
304 |
Q |
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| T |
4091127 |
ctttgtcaaggtaggaaatcggcttctcaattagtttttccaaaaggcctctcttttcaaagtgagaactcattgagcagttcatctca |
4091039 |
T |
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Back To:
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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 52 - 261
Target Start/End: Original strand, 42593493 - 42593711
Alignment:
| Q |
52 |
aatggaaatccttcctcttggtctcaacaaaatattctcaaggagttccatcaacaagccaactgaaac---------tttcatatctggcaatccatca |
142 |
Q |
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| T |
42593493 |
aatggaaatccttcctcgtggtctcgagaaaatattctcaaggagttgtgtcaataagccaactgaaacattattacctttaatatctggcaaccctcct |
42593592 |
T |
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| Q |
143 |
ccatctccatctttttcacaaattaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaaggtaggaaatcggcttct |
242 |
Q |
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| T |
42593593 |
ccatccacatcttttttacatattaggcgaatgaacaacacaagtgcaacaagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttct |
42593692 |
T |
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| Q |
243 |
caattagtttttccaaaag |
261 |
Q |
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| T |
42593693 |
caattagactttccaaaag |
42593711 |
T |
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