View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2810_low_49 (Length: 304)

Name: NF2810_low_49
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2810_low_49
NF2810_low_49
[»] chr1 (4 HSPs)
chr1 (90-294)||(35760646-35760844)
chr1 (90-294)||(46435790-46435988)
chr1 (97-294)||(29119623-29119817)
chr1 (218-294)||(27055505-27055581)
[»] chr5 (6 HSPs)
chr5 (89-294)||(18014624-18014823)
chr5 (89-294)||(39058279-39058478)
chr5 (84-294)||(14148605-14148807)
chr5 (241-279)||(24042969-24043007)
chr5 (191-265)||(26009520-26009593)
chr5 (117-182)||(24043053-24043120)
[»] chr8 (4 HSPs)
chr8 (90-294)||(3469402-3469598)
chr8 (89-271)||(42906197-42906371)
chr8 (241-279)||(30929022-30929060)
chr8 (87-141)||(30929150-30929204)
[»] chr4 (1 HSPs)
chr4 (90-294)||(24021290-24021486)
[»] chr3 (3 HSPs)
chr3 (91-294)||(30991335-30991548)
chr3 (90-182)||(93103-93195)
chr3 (210-289)||(93194-93273)
[»] chr6 (1 HSPs)
chr6 (94-184)||(3808195-3808285)
[»] chr7 (2 HSPs)
chr7 (22-84)||(10330950-10331012)
chr7 (242-284)||(6492493-6492535)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 35760844 - 35760646
Alignment:
Q  90 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaac 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||        
T  35760844 caggggcggagccatgttggctcttgtacaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttc---- 35760749  T
Q  190 accagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctct 289  Q
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35760748 --cagcaccagcacatacatatacacatagtattataaatatgatgatagagtatgataactagattgcatattataaataatacatgcacctcttctct 35760651  T

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Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 46435988 - 46435790
Alignment:
Q  90 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||         
T  46435988 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagattt----- 46435894  T
Q  190 accagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctct 289  Q
     |||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46435893 -ccagcaccagcacatacatatatacatagtattataaatatgatgatatagtatgataactagattgcatattataaataatacatgcacctcttctct 46435795  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 29119817 - 29119623
Alignment:
Q  97 ggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataata---ctacatcatagatttcgaacacca 193  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||   ||||||||||||||||      ||    
T  29119817 ggagccatgttggcttttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataataatactacatcatagatttc------ca 29119724  T
Q  194 gcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctctctgt 293  Q
    | |||| |||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  29119723 gaaccaacacatacatatacacatagtattataaatatgatgatatagtataataactagattgcatattataaataatacatgcacctcttctctatgt 29119624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 27055505 - 27055581
Alignment:
Q  218 agtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctctctgtg 294  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  27055505 agtattataaatatgatgatagagtatgataattagattgcatattataaataatacatgcaccttttctctatgtg 27055581  T

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Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 89 - 294
Target Start/End: Complemental strand, 18014823 - 18014624
Alignment:
Q  89 tcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||        
T  18014823 tcaggggcggagccatgttggctcttgtgcaagcaagtgcctccactaattttgaaattttcatatccatcctatataatactacatcatagattt---- 18014728  T
Q  189 caccagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctc 288  Q
      |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18014727 --ccagcaccagcacatacatatacacatagtattataaatatgatgatagtgtatgataactagattgcatattataaataatacatgcacctcttctc 18014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 89 - 294
Target Start/End: Complemental strand, 39058478 - 39058279
Alignment:
Q  89 tcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaa 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||        
T  39058478 tcaggggcggagcgatgttggctcttgtgcaagcaagtgcccccattaattttgaaatttttatatccatcctatataatactacatcatagattt---- 39058383  T
Q  189 caccagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctc 288  Q
      |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39058382 --ccagcaccagcacatacatatacacatagtattataaatatgatgatagagtatgataactagattgcatattataaataacacatgcacctcttctc 39058285  T

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Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 14148605 - 14148807
Alignment:
Q  84 tataatcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  14148605 tataatcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatt 14148704  T
Q  184 tcgaacaccagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctc 283  Q
    |      |||||||||||||||||| ||||||  | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  14148705 t------ccagcaccagcacatacatatacac--aatattataaatatgatgatatagtatgataactagattgcatattataaataatacatgcacctc 14148796  T
Q  284 ttctctctgtg 294  Q
    |||||| ||||    
T  14148797 ttctctatgtg 14148807  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 24043007 - 24042969
Alignment:
Q  241 gtatgataactagattgcatattataaataatacatgca 279  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  24043007 gtatgataactagattacatgttataaataatacatgca 24042969  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 26009593 - 26009520
Alignment:
Q  191 ccagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattat 265  Q
    ||||||||||||||||   ||||  ||||||||||||||||||||| | | ||||||||||||||  ||||||||    
T  26009593 ccagcaccagcacatatt-atacctatagtattataaatatgatgatataatatgataactagatgacatattat 26009520  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 24043120 - 24043053
Alignment:
Q  117 gcaagcaagtgcccccactaa--ttttgaaatttttatatccatcatatataatactacatcatagat 182  Q
    |||||||||||||||||||||  |||||| |||||  ||| |||| || |||||||||| ||||||||    
T  24043120 gcaagcaagtgcccccactaattttttgagattttagtattcatcctacataatactacttcatagat 24043053  T

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Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 3469598 - 3469402
Alignment:
Q  90 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||         
T  3469598 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagattt----- 3469504  T
Q  190 accagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctct 289  Q
     |||||||||||||||||| ||||||  ||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3469503 -ccagcaccagcacatacatatacac--agtattataaatatgatgatatagtatgataactagattgtatattataaataatacatgcacctcttctct 3469407  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 42906197 - 42906371
Alignment:
Q  89 tcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||        
T  42906197 tcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaatttttaaattttcatatccatcctatataatactacatcatagattt---- 42906292  T
Q  189 caccagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataa 271  Q
      |||||||||||||||||| ||||||||  ||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  42906293 --ccagcaccagcacatacatatacacat--tattataaatatgatgatatagtatgataactagattgtatattataaataa 42906371  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 30929060 - 30929022
Alignment:
Q  241 gtatgataactagattgcatattataaataatacatgca 279  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  30929060 gtatgataactagattacatattataaataatacatgca 30929022  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 30929204 - 30929150
Alignment:
Q  87 aatcaggggcggagccatgttggctcttgtgcaagcaagtgcccccactaatttt 141  Q
    |||||| |||||||||| ||| ||   ||||||||||||||||||||||||||||    
T  30929204 aatcagtggcggagccacgttagccactgtgcaagcaagtgcccccactaatttt 30929150  T

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Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 90 - 294
Target Start/End: Original strand, 24021290 - 24021486
Alignment:
Q  90 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||         
T  24021290 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagattt----- 24021384  T
Q  190 accagcaccagcacatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctct 289  Q
     |||||||||||||||||| ||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24021385 -ccagcaccagcacatacatatacacat--tattataaatatgatgatatagtatgataactagattgcatattataaataatacatgcacctcttctct 24021481  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 91 - 294
Target Start/End: Original strand, 30991335 - 30991548
Alignment:
Q  91 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagatttcgaaca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||    
T  30991335 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 30991434  T
Q  191 ccagcaccagc----------acatacacatacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcac 280  Q
    |||||||||||          ||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  30991435 ccagcaccagcacatacatatacatacatatacacatagtattataaatatgatgatagtgtatgataactggattgcatattataaataatacatgcac 30991534  T
Q  281 ctcttctctctgtg 294  Q
    ||||||||| ||||    
T  30991535 ctcttctctatgtg 30991548  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 93103 - 93195
Alignment:
Q  90 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  93103 caggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagat 93195  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 93194 - 93273
Alignment:
Q  210 atacacatagtattataaatatgatgaaagagtatgataactagattgcatattataaataatacatgcacctcttctct 289  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93194 atacacatagtattataaatatgatgatagagtatgataactagattgcatattataaataatacatgcacctcttctct 93273  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 3808285 - 3808195
Alignment:
Q  94 ggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaatttttatatccatcatatataatactacatcatagattt 184  Q
    |||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||| ||||||||| |||||||||||| |||| ||||||    
T  3808285 ggcggagccatgttcgctcttgtgcaagcatgtgccaccacaaattttgaaattttcatatccatcctatataatactatatcaaagattt 3808195  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 10331012 - 10330950
Alignment:
Q  22 taaggttatttacactcaagcacgaagaaaaaagttgtatcggaaaatgagggtgaatcattt 84  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  10331012 taaggttatttacactcaagcacgaagaaaaaagttgtaccgaaaaatgagggtgaagcattt 10330950  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 6492493 - 6492535
Alignment:
Q  242 tatgataactagattgcatattataaataatacatgcacctct 284  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  6492493 tatgataactagatgacatattataagtaatacatgcacctct 6492535  T

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