View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_5 (Length: 585)
Name: NF2810_low_5
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 554
Target Start/End: Original strand, 25785901 - 25786426
Alignment:
| Q |
20 |
tgatgcatgcattttctaaacacattgataagattattcttgtcttaaggtttcaggataggattat--tttggatattgttttggtgcttgagtttaag |
117 |
Q |
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| T |
25785901 |
tgatgcatgcattttctaaacacattgataagattattcttgtcttaaggtttcaggataggattatattttggatattgttttggtgcttgagtttaag |
25786000 |
T |
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| Q |
118 |
ttttctttcaatatgagtcacgactaataaattctttcttactcatttgaaaatgtattcagtttttcaatgttatatgtaaaactttaatcagttattt |
217 |
Q |
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| T |
25786001 |
ttttctttcaatattattcatgactaataaattctttcttactcatttgaaaatgaattcagtttttcaatgttatatgttaaacttgaatcatttattt |
25786100 |
T |
|
| Q |
218 |
tggttttggtcttaaccatcaataatgtttgataatttaataccatctctactagttctaagcctgaataattggacatctgcatataagttcacccann |
317 |
Q |
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| T |
25786101 |
tggttttggtcttaaccatcgataatgtttgataatttaataccatctctactagttctaagcctgaaaaattgtacatttgcatacaagttcactc-ct |
25786199 |
T |
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| Q |
318 |
nnnnnnnnnnnnnngtatagttaaaatttaataatgtatagacattcatgatgtaggataggattatcttctgtaacccatagaattatttgtagatgtg |
417 |
Q |
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|| |||||||| |||||| ||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
25786200 |
tttttattttttttgtttagttaaattttaat-------agacattcatgatttaggataggattatcttctgcaa-ccttagaattatttgtagatgtg |
25786291 |
T |
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| Q |
418 |
gctaggtaaatttttagttgttcacatgattcctcagttcagttgtttagtattctcagttacagagtgttaagtctatcctagattcaacctacctctc |
517 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||| |||| |
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| T |
25786292 |
gctgtgtaaatttttagttgttcacatgattcctcagttcagttgtttagtattatcagttacagagtgttcagtctatcatagactcaaccta--tctc |
25786389 |
T |
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| Q |
518 |
tttctcaatctaggtttgagtttgatgaattgggagt |
554 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
25786390 |
tttcgcaatctaggtttgagtttgatgaattgggagt |
25786426 |
T |
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