View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_50 (Length: 303)
Name: NF2810_low_50
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 3620758 - 3620590
Alignment:
| Q |
117 |
catatagattgttgaggtgtaataataataaggatcctcttttctcaccaagtaaattcattgctgcaccgagcgttccaccagttgcaatcagatcatc |
216 |
Q |
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| T |
3620758 |
catatagattgttgaggtgtaataataataaggatcctcttttctcaccaagtaaattcattgctgcaccgagcgttccaccagttgcaatcaaatcatc |
3620659 |
T |
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| Q |
217 |
aaccacaatagcacgttcaccagcttcaacagctccaacatgcatctcaagacaatcccttccatattc |
285 |
Q |
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| T |
3620658 |
aaccacaatagcacgttcaccagtttcaacagctccaacatgcatctcaagacaatcccttccatattc |
3620590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 3620903 - 3620810
Alignment:
| Q |
14 |
cagagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggagactttgcttacaaagacgaccaatttgg |
107 |
Q |
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| T |
3620903 |
cagagacctcattgaaaaactattaacaaagacagaaactagtttaaaatattaacagagtcagagactttgcttacaaagacgaccaatttgg |
3620810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 3620927 - 3620988
Alignment:
| Q |
14 |
cagagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtc |
75 |
Q |
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| T |
3620927 |
cagagacctaattgaaaaacttttgataaaaactgagactagtttgtaatattaacagagtc |
3620988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 41960144 - 41960238
Alignment:
| Q |
191 |
gttccaccagttgcaatcagatcatcaaccacaatagcacgttcaccagcttcaacagctccaacatgcatctcaagacaatcccttccatattc |
285 |
Q |
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| T |
41960144 |
gttccaccagtagcaatcaaatcatcaactactaaggcacgttcaccatgttcaactcctccaacatgcatctcaagacaatcccttccgtattc |
41960238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 16977270 - 16977322
Alignment:
| Q |
30 |
aaactattaacaaagacggaaactagtttaaaatattaacagagtcggagact |
82 |
Q |
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| T |
16977270 |
aaactattgacaaagacggagagtagttttaaatattaatagagtcgaagact |
16977322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5656567 - 5656632
Alignment:
| Q |
17 |
agacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggagact |
82 |
Q |
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| T |
5656567 |
agacctaattgagaaacttttaacaaagacagagactagtttaaaatattaatatagtcggggact |
5656632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 41008912 - 41008974
Alignment:
| Q |
18 |
gacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggaga |
80 |
Q |
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| T |
41008912 |
gacctaattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagaga |
41008974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 21248983 - 21249036
Alignment:
| Q |
15 |
agagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaa |
68 |
Q |
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||||||| |||||||||||| || ||||||| ||| |||| ||||||||||||| |
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| T |
21248983 |
agagaccaaattgaaaaacttttgacaaagatggagactaatttaaaatattaa |
21249036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 15395417 - 15395469
Alignment:
| Q |
16 |
gagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaa |
68 |
Q |
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||||||||||||||||||| || ||||| || | ||||| ||||||||||||| |
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| T |
15395417 |
gagacctaattgaaaaacttttgacaaaaacagtaactattttaaaatattaa |
15395469 |
T |
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