View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_6 (Length: 575)
Name: NF2810_low_6
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 12630776 - 12631330
Alignment:
| Q |
1 |
atcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaatccacttgtgttgctttggcggtattgacttgaaatttgtgagtgtg |
100 |
Q |
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| T |
12630776 |
atcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaaaccacttgggttgctttggtggtattgacttgaaatttg-----gtg |
12630870 |
T |
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| Q |
101 |
ctccttcttaaggtctcagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttggtgctcctnnnnnnnttgtaccatggg |
200 |
Q |
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| T |
12630871 |
cccct-----------ca---aaaaagaaatataggtatatctaccaacaaccaagtaaaaataataattttggtgaccctcaaaaaattgtaccatggg |
12630956 |
T |
|
| Q |
201 |
cggccgcccatgcttaaggccaccctagatgagactctaggggtacacacattctaaacacctttgataatgatatctcgttaaaggaaagaattaagct |
300 |
Q |
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| T |
12630957 |
cggccgcccatgcttaaggccaccctagatgagactctaggg-taaacacattctaaacacctttgataatgatatctcgttaaaggaaagaactaagct |
12631055 |
T |
|
| Q |
301 |
ttctctcttgatttctctcaggatattcttttcagttgagagattggaaaaagaggttaaaattagagtttgctcttggagagttcgtgaagctaattca |
400 |
Q |
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| T |
12631056 |
ttctctcttgatttctttgaggatattcttttcagttgagagattggaaaaaaaggttgaaattagagtttgctcttggacagttcttgaagctaattca |
12631155 |
T |
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| Q |
401 |
ttgaagttaattgtgctcaatagcccaacccaaacataaaatatatcgaaactacctgaaatccattatcctcttattcactctacctgaccgctcaaga |
500 |
Q |
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| T |
12631156 |
ttgaagttaattatgctcaatagtccaacccaaacataaaatacatcaaaactacctgaaatccattatcctcttattcactctacctgaccgctcaaga |
12631255 |
T |
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| Q |
501 |
gctttccctttctctcaatctcatctcgtcatcttcactctcactttctccacctctcggccccccttagttttt |
575 |
Q |
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| T |
12631256 |
gctttccctttctctcagtctcatctcgtcaccttcactctcactttctcctcctctcggcctcctttagttttt |
12631330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 38551790 - 38551832
Alignment:
| Q |
74 |
ggtattgacttgaaatttgtgagtgtgctccttcttaaggtct |
116 |
Q |
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| T |
38551790 |
ggtattgatttgaaatttgggagtgtgctctttcttaaggtct |
38551832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 34688652 - 34688728
Alignment:
| Q |
247 |
acacattctaaacacctttgataatgatatctcgttaaaggaaagaattaagctttctctcttgatttctctcaggat |
324 |
Q |
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| T |
34688652 |
acacattctaaacaccttgggtagtgagatcccattaaatgaa-gatctaagctttctctcttgatttctcttaggat |
34688728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 34693180 - 34693256
Alignment:
| Q |
247 |
acacattctaaacacctttgataatgatatctcgttaaaggaaagaattaagctttctctcttgatttctctcaggat |
324 |
Q |
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| T |
34693180 |
acacattctaaacaccttgggtagtgagatcccattaaatgaa-gatctaagctttctctcttgatttctcttaggat |
34693256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 20756738 - 20756682
Alignment:
| Q |
117 |
cagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttg |
173 |
Q |
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| T |
20756738 |
cagttaaaaagaaatatatttatatgtactaaccaccgagtaaaaataataattttg |
20756682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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