View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_64 (Length: 250)
Name: NF2810_low_64
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7547275 - 7547059
Alignment:
| Q |
1 |
caccaacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaataggaagaaacaaacttaaaactgtaacatgctgaata |
100 |
Q |
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| T |
7547275 |
caccaacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaataggaagaaacaaacttaaaactgtaacatgctgaata |
7547176 |
T |
|
| Q |
101 |
caaaaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagcttctcaaacagatcgttagcactcgaccagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7547175 |
caaaaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagcttctcaaacagatcgttagcactcgaccagttt |
7547076 |
T |
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| Q |
201 |
ttaagggtgtcaatcaa |
217 |
Q |
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||||||||||||||||| |
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| T |
7547075 |
ttaagggtgtcaatcaa |
7547059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 1128494 - 1128294
Alignment:
| Q |
4 |
caacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaataggaagaaacaaacttaaaactgtaacatgctgaatacaa |
103 |
Q |
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||||||||| || ||| | ||||||| |||||||||||| | |||||||| ||||||||||||| ||| |||||||||| |||||| || | ||||||| |
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| T |
1128494 |
caacatccttaacacgctggcattctatctacatgcatacaatatgatataataatcaataggaggaagaaaacttaaaa-tgtaacctgttaaatacaa |
1128396 |
T |
|
| Q |
104 |
aaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagcttctcaaacagatcgttagcactcgaccagttttta |
203 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||| |||| ||| |||||| | |||||||||||| |
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| T |
1128395 |
aaattaaatgcttt-taaagctaccttcacccattgcttcaccacaggtataggagttggaagcttctcgaacatatctttagcaatggaccagttttta |
1128297 |
T |
|
| Q |
204 |
agg |
206 |
Q |
| |
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||| |
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| T |
1128296 |
agg |
1128294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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