View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_69 (Length: 247)
Name: NF2810_low_69
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 20993949 - 20993736
Alignment:
| Q |
22 |
tatacataagtcataccacaatacgattttacgacaaatggaagaaaaactttttctaaaactttctcatcaataaaggttgatagatctagtgaattgg |
121 |
Q |
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| T |
20993949 |
tatacataagtcataccacaatataattttacgacaa-tggaagaaaaaaaaattctaaaactttctcatcaataaaggttgatagatctagtgaattgg |
20993851 |
T |
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| Q |
122 |
ttaaacaaa-----catattaaaattcacactcccataagttaaaaccacaagatttattgtagattttgagtgagtatttacttggtttgcaccctcgg |
216 |
Q |
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| T |
20993850 |
ttaaacaaaacaaacatataaaaatccaaattcccataagttaaaaccacaagagttattgtagattttgagtgagtatttacttggtttgcaccctcgg |
20993751 |
T |
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| Q |
217 |
ccaatacaacctttt |
231 |
Q |
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||||||||||||||| |
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| T |
20993750 |
ccaatacaacctttt |
20993736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 16172525 - 16172417
Alignment:
| Q |
22 |
tatacataagtcataccacaatacgattttacgacaaatggaagaaaaactttttctaaaactttctcatcaataaaggttgatagatctagtgaattgg |
121 |
Q |
| |
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|||| |||||| ||||||| || ||||| ||| ||| ||||||||| |||| |||||| | |||| | ||| ||||| |||||||||||||||||| |
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| T |
16172525 |
tatatataagtaataccacggtataattttgcgataaaaggaagaaaatctttcactaaaattctctcctaaatttaggttaatagatctagtgaattgg |
16172426 |
T |
|
| Q |
122 |
ttaaacaaa |
130 |
Q |
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||||||||| |
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| T |
16172425 |
ttaaacaaa |
16172417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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