View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_76 (Length: 240)
Name: NF2810_low_76
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24147338 - 24147561
Alignment:
| Q |
1 |
ttacaaattgatctaattatatcttatcacatagataattaaggatatattttaaaacctaacataacaaagtgacatagtattaggatctgatcaaata |
100 |
Q |
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| T |
24147338 |
ttacaagttgatctaattatatctcatcacatagataattaaggatatattttaaaacctaacataacaaaatgacatagtattaggatctgatcaaata |
24147437 |
T |
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| Q |
101 |
tttgaaaggttgaacacattataaataaattaagattcttatgactaatgtaattgagggatatcattctcaacctttgcctatacaccaagctatttca |
200 |
Q |
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| T |
24147438 |
tttgaaaggttgaacacattataaataaattaagattcttatgactaatgtaattgagggatatcattctcaacctttgcc--tacaccaagctatttca |
24147535 |
T |
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| Q |
201 |
agatatctgatactttatgttgtttt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24147536 |
agatatctgatactttatgttgtttt |
24147561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 24152792 - 24153011
Alignment:
| Q |
5 |
aaattgatctaattatatcttatcacatagataattaaggatatattttaaaacctaacataacaaagtgacatagtattaggatctgatcaaatatttg |
104 |
Q |
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|||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24152792 |
aaattgatctaattatattttgtcacgtagacaattaaggatatattttaaaacctaacataacaaagtgacatagtattaggatctgatcaaatatttg |
24152891 |
T |
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| Q |
105 |
aaaggttgaacacattataaataaattaagattcttatgactaatgtaattgagggatatcattctcaacctttgcctatacaccaagctatttcaagat |
204 |
Q |
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| T |
24152892 |
aaaggttgaacacattataaataaattaagattcttatgactaatgtaattgagggatatcattctcaacctttgcc--tacaccaagctatttcaagat |
24152989 |
T |
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| Q |
205 |
atctgatactttatgttgtttt |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
24152990 |
atctgatactttatgttgtttt |
24153011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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