View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_79 (Length: 238)
Name: NF2810_low_79
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_79 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 7547895 - 7547676
Alignment:
| Q |
19 |
gaacaaggtgtagcttcctgggtacatagtgcatgtagacaatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaa |
118 |
Q |
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| T |
7547895 |
gaacaaggtgtagcttcctgggtacatagtgcacgtagacaatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaa |
7547796 |
T |
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| Q |
119 |
tctccttctgtggaagtggacttcatattaatggcttatgcatctttaatacaaagagctttacagaaaataggcggtagatatttgagggagacactag |
218 |
Q |
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| T |
7547795 |
tctccttctgtggaagtggacttcatattaatggcttatgcatctttaatacaaagagctttacagaaaataggcagtagatatttgagggagacactag |
7547696 |
T |
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| Q |
219 |
aagaaccaaacagcttacca |
238 |
Q |
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| T |
7547695 |
aagaaccaaacagcttacca |
7547676 |
T |
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Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 1129130 - 1128945
Alignment:
| Q |
30 |
agcttcctgggtacatagtgcatgtagacaatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaatctccttctgt |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1129130 |
agcttcctgggtacatagtgcacgtagacaatatgcaacacacagctgattataaatgggaattgaattggtacacatctcaccagaaatctccttctgc |
1129031 |
T |
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| Q |
130 |
ggaagtggacttcatattaatggcttatgcatctttaatacaaagagctttacagaaaataggcggtagatatttgagggagacac |
215 |
Q |
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| T |
1129030 |
agaagtggacttcatattaatggcctatgcatctctaatatatagagctttacagaaaatagaggttagatatttgagggagacac |
1128945 |
T |
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