View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_8 (Length: 547)
Name: NF2810_low_8
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 39092942 - 39093488
Alignment:
| Q |
1 |
cccttgtagacacataaaacaacagtaaagagacttaaataaaactcttaatagaatacgtgttaaatgcctccaagacaaaccaagaaaaaccgatggg |
100 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39092942 |
cccttgtagacacctaaaacaacaataaagagacttaaataaaactcttaatagaatacatgttaaatgcctccaagacaaaccaagaaaaaccgatggg |
39093041 |
T |
|
| Q |
101 |
aacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcacgaccttaatactttatgcaactctgtgatagaaacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39093042 |
aacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcacgaccttaatactttatgcaactctg--atagaaacctc |
39093139 |
T |
|
| Q |
201 |
atagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagataggaaccaactatcttagattaatatatattcttataggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093140 |
atagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagataggaaccaactatcttagattaatatatattcttataggt |
39093239 |
T |
|
| Q |
301 |
gtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataataattagcctatgcacgtcattatcttaaaaaatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093240 |
gtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataataattagcctatgcacgtcattatcttaaaaaatatt |
39093339 |
T |
|
| Q |
401 |
gccattatgataaac---------cgtgtataaaaatgttgagaaaattactcttatgtcattaaccaaattttaattttcgtgtctcaacaattttgag |
491 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093340 |
gccattatgataaaccgtgtatctcgtgtataaaaatgttgagaaaattactcttatgtcattaaccaaattttaattttcgtgtctcaacaattttgag |
39093439 |
T |
|
| Q |
492 |
attcaattatgtatatattgtattagagatgccgaaggggcctttgttt |
540 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39093440 |
attcaattatgtatatattgtattagagatgcccaaggggcctttgttt |
39093488 |
T |
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