View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_83 (Length: 235)
Name: NF2810_low_83
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20701576 - 20701796
Alignment:
| Q |
1 |
ctgctgctaaatattgtgtttatatttagtaattagttttattgggatgcaattttaatattgttgtaatggttttggtgcaggcaaggcgaattttggt |
100 |
Q |
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| T |
20701576 |
ctgctgctaaatattgtgtttatatttagtaattagttttattgggatgcaattttaatattgttgtaatggttttggtgcaggcaaggcgaattttggt |
20701675 |
T |
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| Q |
101 |
gagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatggttctagaccaaacagagttgctggttctggttattggaaagccacaggaa |
200 |
Q |
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| T |
20701676 |
gagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatggttctagaccaaacagagttgctggttctggttattggaaagccacaggaa |
20701775 |
T |
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| Q |
201 |
cagacaaaattatcacaactg |
221 |
Q |
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| T |
20701776 |
cagacaaaattatcacaactg |
20701796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 33727817 - 33727941
Alignment:
| Q |
94 |
ttttggtgagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatggttctagaccaaacagagttgctggttctggttattggaaagcc |
193 |
Q |
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| T |
33727817 |
ttttggggagaaagaatggtatttctttagtccaagagataggaagtatccaaatgggacaaggccaaatagagtagctggatctgggtattggaaagca |
33727916 |
T |
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| Q |
194 |
acaggaacagacaaaattatcacaa |
218 |
Q |
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| T |
33727917 |
actggaacagacaagattataacaa |
33727941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 33762255 - 33762349
Alignment:
| Q |
95 |
tttggtgagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatggttctagaccaaacagagttgctggttctggttattggaa |
189 |
Q |
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| T |
33762255 |
tttggagagcaagagtggtatttctttagtccaagggacaggaagtatccgaatggagctaggccaaacagggctgcaacttctggttattggaa |
33762349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 44371081 - 44371172
Alignment:
| Q |
101 |
gagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatggttctagaccaaacagagttgctggttctggttattggaaagc |
192 |
Q |
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| T |
44371081 |
gagaaagaatggtattttttctctccaagggacagaaagtatccgaacggttcgaggccaaatcgagctgctggaagtggttattggaaagc |
44371172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 40733882 - 40733833
Alignment:
| Q |
95 |
tttggtgagaaagaatggtatttcttcagtccaagggacaggaaatatcc |
144 |
Q |
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||||||||| |||||||||||||||| | |||||||||||| || ||||| |
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| T |
40733882 |
tttggtgaggaagaatggtatttctttactccaagggacagaaagtatcc |
40733833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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