View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_85 (Length: 235)
Name: NF2810_low_85
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 8538046 - 8538222
Alignment:
| Q |
44 |
cacatcactttccaatttccattcattcaacactgtcatatttaggttcagattcactttcccttcattcacatctacactatgagattcagattcagtc |
143 |
Q |
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| T |
8538046 |
cacatcactttccaatttccgttcattcaacactgtcatattcaagttcagattcactttcccttcattcacatctacactatgagattctgatttagtc |
8538145 |
T |
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| Q |
144 |
ttgagtgaaagaattgaagcaaatcgaaaatcgcaattgctgtgttgcatagctttagagttggaaatgggagaaga |
220 |
Q |
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| T |
8538146 |
tcgagagaaagaattgaagcaaatcgaaaatcgcaattgttgtgttgcatagctttagagttagaaatgggagaaga |
8538222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8537889 - 8537931
Alignment:
| Q |
1 |
ccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
43 |
Q |
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| T |
8537889 |
ccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
8537931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 14210821 - 14210870
Alignment:
| Q |
172 |
aatcgcaattgctgtgttgcatagctttagagttggaaatgggagaagag |
221 |
Q |
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| T |
14210821 |
aatcgcaattgttgtgttgcatatctttggaattggaaatgggagaagag |
14210870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 26798206 - 26798166
Alignment:
| Q |
3 |
atatcgcatttaatgagtatctgaaattgatgaaagaagag |
43 |
Q |
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| T |
26798206 |
atatcgcttttaatgagtatgtgaaattgatgaaagaagag |
26798166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 8395817 - 8395856
Alignment:
| Q |
3 |
atatcgcatttaatgagtatctgaaattgatgaaagaaga |
42 |
Q |
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| T |
8395817 |
atatcgcttttaatgagtatgtgaaattgatgaaagaaga |
8395856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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