View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2810_low_89 (Length: 231)
Name: NF2810_low_89
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 11227333 - 11227545
Alignment:
| Q |
1 |
tgaagaagaacaagaacctgatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaattttatgttagagtaatttaat |
100 |
Q |
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| T |
11227333 |
tgaagaagaacaagaacctgatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaat |
11227432 |
T |
|
| Q |
101 |
tatatgaacattttgtgcttttctaataagctataagtcatagtttattgttcttttcaactcaattaaggtttatgaactttgtactatttttcttata |
200 |
Q |
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| T |
11227433 |
tatatgaacattttgtgcttttctaataagctataagtcatagtttattgttcttttcaactcaattaaggtttatgaactttgtactatttttcttata |
11227532 |
T |
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| Q |
201 |
tattgacctgttt |
213 |
Q |
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| T |
11227533 |
tattgacctgttt |
11227545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 10128093 - 10128203
Alignment:
| Q |
95 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtactattt |
192 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||| || ||||| | | |||| || |||||||||||||| |||||||||||||||||||||| |
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| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtactattt |
10128192 |
T |
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| Q |
193 |
ttcttatatat |
203 |
Q |
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| T |
10128193 |
ttcttatatat |
10128203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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