View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2810_low_92 (Length: 220)
Name: NF2810_low_92
Description: NF2810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2810_low_92 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 47296632 - 47296444
Alignment:
| Q |
1 |
acttgcatgacaacagctctggatcctaagtttaaaacttttttattatactgccactgcattaaaagtatattctttgctgtattcaattatgtaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47296632 |
acttgcatgacaacagctctggatcctaagtttaaaacttttttattatactaccactgcattaaaagtatattctttgctgtattca------------ |
47296545 |
T |
|
| Q |
101 |
gttcacatatattaattgaactgcatgtttcagttagatcatatctcaagcatatattgaggtagctgttgaataacaattcaaatgaacaataaataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47296544 |
-----catatattaattgaactgcatgtttcagttagatcatatctcaagcatatattgaggtagctgttgaataacaattcaaatgaacaataaataat |
47296450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47289876 - 47289785
Alignment:
| Q |
1 |
acttgcatgacaacagctctggatcctaagtttaaaacttttttattatactgccactgcattaaaagtatattctttgctgtattcaatta |
92 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47289876 |
acttgcatgacaacagctctggatccgaagtttaaaacttttttattatactaccactgcattaaaagtatattctttgctgtattcaatta |
47289785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University