View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811-Insertion-2 (Length: 791)
Name: NF2811-Insertion-2
Description: NF2811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811-Insertion-2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 313 - 791
Target Start/End: Original strand, 54478530 - 54479006
Alignment:
| Q |
313 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagtacgtgtatctagtttt |
412 |
Q |
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| T |
54478530 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagt----gtatctagtttt |
54478625 |
T |
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| Q |
413 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
512 |
Q |
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| T |
54478626 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
54478725 |
T |
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| Q |
513 |
tgaaaataatgcaaatatatattaattatannnnnnnnnnggaggcagtgataattcaatgaagaaagctttttgtaacatatttta---aattcattga |
609 |
Q |
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| T |
54478726 |
tgaaaataatgcaaatatatattaattatatattttttt-ggaggcagtgataattcaatgaagaaagctttttgtaacatattttattaaattcattga |
54478824 |
T |
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| Q |
610 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
709 |
Q |
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| T |
54478825 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
54478924 |
T |
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| Q |
710 |
atcaaagtcttttttcattctctttcccattaaatttcctcacattgctcactcacactcacatcagaacattcttttcttt |
791 |
Q |
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| T |
54478925 |
atcaaagtctgttttcattctctttcccattaaatttcctcacattgctcactcacactcgcatcagaacattcttttcttt |
54479006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 54478361 - 54478509
Alignment:
| Q |
174 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaaaatcttgatc |
273 |
Q |
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| T |
54478361 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaacatcttgatc |
54478460 |
T |
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| Q |
274 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
322 |
Q |
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| T |
54478461 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
54478509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 54478203 - 54478286
Alignment:
| Q |
8 |
aaaataatgttgcgagcaaagnnnnnnngagataatcaaatcctcaaaatcatgtaccaaaattagaaggaatcttgctttgtc |
91 |
Q |
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| T |
54478203 |
aaaataatgttgcgagcaaagaaaaaaagagataatcaaatcctcaaaatcatgtaccaaagttagaaggaatcttgctttgtc |
54478286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 44590237 - 44590293
Alignment:
| Q |
262 |
aaaatcttgatctgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaat |
318 |
Q |
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| T |
44590237 |
aaaatctggatctgcatcctcgtagcaccaaacaagtgctgtctccttatcttcaat |
44590293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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