View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811-Insertion-3 (Length: 475)

Name: NF2811-Insertion-3
Description: NF2811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811-Insertion-3
NF2811-Insertion-3
[»] chr8 (3 HSPs)
chr8 (14-326)||(33186458-33186770)
chr8 (14-246)||(5788814-5789046)
chr8 (387-475)||(33186308-33186396)
[»] chr1 (11 HSPs)
chr1 (14-280)||(36989109-36989375)
chr1 (169-280)||(28496355-28496466)
chr1 (14-147)||(12804602-12804735)
chr1 (22-245)||(42286921-42287144)
chr1 (184-275)||(31644322-31644413)
chr1 (19-77)||(28496202-28496260)
chr1 (16-143)||(4160283-4160410)
chr1 (184-281)||(4160142-4160239)
chr1 (14-147)||(12774839-12774972)
chr1 (195-280)||(12804783-12804868)
chr1 (28-61)||(31644163-31644196)
[»] chr2 (4 HSPs)
chr2 (25-324)||(38895959-38896258)
chr2 (14-260)||(42898087-42898333)
chr2 (37-324)||(5435530-5435817)
chr2 (14-80)||(40040758-40040824)
[»] chr4 (2 HSPs)
chr4 (25-280)||(30518250-30518505)
chr4 (14-147)||(22085597-22085730)
[»] chr3 (5 HSPs)
chr3 (172-316)||(39683101-39683245)
chr3 (34-322)||(12105837-12106126)
chr3 (34-322)||(46987821-46988110)
chr3 (91-147)||(39683468-39683523)
chr3 (28-74)||(52248460-52248506)
[»] chr7 (2 HSPs)
chr7 (28-293)||(44150905-44151170)
chr7 (184-257)||(40749182-40749255)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 33186770 - 33186458
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186770 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 33186671  T
Q  114 atgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186670 atgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgt 33186571  T
Q  214 agttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttggtgacagagcaatcacctctg 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33186570 agttgaagattctgatctctttgaaaccctttgttacatatttcacacacaaatctgtttgtagctaacaacgttgttggtgacagagcaatcacctctg 33186471  T
Q  314 cttctggatcttc 326  Q
    |||||||||||||    
T  33186470 cttctggatcttc 33186458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 5788814 - 5789046
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    |||| ||||| || |||||||||||||| ||||||||||| |||||  ||||||| || || || ||||| ||||| ||||| ||||| || ||||||||    
T  5788814 tctttgaacacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatg 5788913  T
Q  114 atgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgt 213  Q
    ||| |||||||| ||||| ||||| ||||| ||  | || ||||| |||||||||| ||||||| |||  |||||||||| |||||| |||||||| ||     
T  5788914 atgcacacaagttggttctggacatacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtga 5789013  T
Q  214 agttgaagattctgatctctttgaaaccctttg 246  Q
    ||||||||||| |||||||||||||||||||||    
T  5789014 agttgaagattttgatctctttgaaaccctttg 5789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 33186396 - 33186308
Alignment:
Q  387 gaacatattaatttgtacctggcattcctgggagatttctctttttcttggtgggttttggaattggtgattgaatattgttattacca 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186396 gaacatattaatttgtacctggcattcctgggagatttctctttttcttggtgggttttggaattggtgattgaatattgttattacca 33186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 36989375 - 36989109
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| | |||||| |  ||||| | ||| | |||    
T  36989375 tcttagaacacttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatg 36989276  T
Q  114 atgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgt 213  Q
     || ||||| | |||||||||||||||||||||||| || |||||||||  ||| | ||||||| | || ||||| || |  || ||||||||||  ||     
T  36989275 gtgtacacatgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgc 36989176  T
Q  214 agttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagcca 280  Q
    ||||||||||| || ||||||||||| || ||| ||||||||||||| || ||||||||||||||||    
T  36989175 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 36989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 28496355 - 28496466
Alignment:
Q  169 gatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatc 268  Q
    ||||| ||||| || |||||||| || || ||||||||||||||||||||||| || ||||||||||| ||||||||| | ||||||||||| |  ||||    
T  28496355 gatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttgttgcatatttcacagatgaatc 28496454  T
Q  269 tgtttgtagcca 280  Q
    ||||||| ||||    
T  28496455 tgtttgttgcca 28496466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 12804602 - 12804735
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    |||||||||| || |||||||||||||||||||||||||| |||||| |||||||||| || || ||||| |  ||||| | ||| || ||||| |||||    
T  12804602 tcttagaacacttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatg 12804701  T
Q  114 atgaacacaagtaggttcaggacaaacataaacc 147  Q
     |||||||| || ||||| ||||| | |||||||    
T  12804702 gtgaacacatgttggttctggacacaaataaacc 12804735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 42287144 - 42286921
Alignment:
Q  22 catttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacac 121  Q
    ||||| |||||||||||||| |||||||| || || | | | || |||||||| || ||||||| ||| ||||||||||| ||||| || ||||| || |    
T  42287144 catttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgc 42287045  T
Q  122 aagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaag 221  Q
    | || || |||||||| | ||||||| || ||||    |||||  | ||  ||||  | || ||||| || ||||| |||||||||||||| ||||||||    
T  42287044 atgtgggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaag 42286945  T
Q  222 attctgatctctttgaaacccttt 245  Q
    ||| || || ||||||||||||||    
T  42286944 attttgctccctttgaaacccttt 42286921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 31644322 - 31644413
Alignment:
Q  184 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgt 275  Q
    ||||||||||| ||||||||||| |||||||| || || || |||||||||||||| || ||| | || || |||||||||||||| |||||    
T  31644322 ttccatggtaggttatgtcctctcctatgtagctgtaggttttgatctctttgaaaacccttgttgcagatctcacacacaaatctatttgt 31644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28496202 - 28496260
Alignment:
Q  19 gaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttat 77  Q
    |||||||| |||||||||||||| |||||||| || ||||||| |||||||||||||||    
T  28496202 gaacatttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttat 28496260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 4160410 - 4160283
Alignment:
Q  16 ttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgat 115  Q
    ||||||||||||||||| |||||||| |||||||| || || ||  |||||||||| || || |||||||  ||||| |  || || ||||| ||||| |    
T  4160410 ttagaacatttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggt 4160311  T
Q  116 gaacacaagtaggttcaggacaaacata 143  Q
    ||||||| || || || |||||||||||    
T  4160310 gaacacatgttggctctggacaaacata 4160283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 4160239 - 4160142
Alignment:
Q  184 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagccaa 281  Q
    |||||||| | ||||||||||||  |||| || |||||||| |||||||||||||| |||||| |||| || ||||| |  || |||||||| |||||    
T  4160239 ttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttgttacaaatctcacaaatgaacctgtttgttgccaa 4160142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 12774972 - 12774839
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    |||||||||| || ||||| ||||| |||||||||||||| |||||| || |||| || || || ||||| |  ||||| | ||| || ||||| |||||    
T  12774972 tcttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatg 12774873  T
Q  114 atgaacacaagtaggttcaggacaaacataaacc 147  Q
     |||||||| || ||||| ||||| | |||||||    
T  12774872 gtgaacacatgttggttctggacacaaataaacc 12774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 12804783 - 12804868
Alignment:
Q  195 attatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagcca 280  Q
    ||| |||||||||||||||||||| | ||| || || ||||||||||||||   ||| | |||||| |||||||||||||| ||||    
T  12804783 attgtgtcctcttctatgtagttgtaaattttgctccctttgaaaccctttttgacacacttcacatacaaatctgtttgttgcca 12804868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 31644163 - 31644196
Alignment:
Q  28 tcacatttccactttttctcaccatgttttctac 61  Q
    ||||||||||| ||||||||||||||||||||||    
T  31644163 tcacatttccattttttctcaccatgttttctac 31644196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 25 - 324
Target Start/End: Original strand, 38895959 - 38896258
Alignment:
Q  25 ttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaag 124  Q
    |||||||| |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||| || ||||||| || ||||||||| |    
T  38895959 ttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacacatg 38896058  T
Q  125 taggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagatt 224  Q
    |    || ||||| ||||| || || ||||| ||||||||||||| ||||||| |||| ||||| ||||| |||||||| | || ||| |||||||||||    
T  38896059 tcttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagatt 38896158  T
Q  225 ctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttggtgacagagcaatcacctctgcttctggatct 324  Q
     ||||| ||||||||  | ||   ||| ||||||||||| ||||||||||| |||| ||| ||| ||||||| | ||  ||||| |||||||| ||||||    
T  38896159 ttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatgtttttggtgataaagatatcacttctgcttcaggatct 38896258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 42898333 - 42898087
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    ||||||| || || |||||||||||||| |||||||| || ||||| || |||||||| || || |||||||  || || || ||||| || || |||||    
T  42898333 tcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatg 42898234  T
Q  114 atgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgt 213  Q
     || |||||||| ||||| ||||| ||||||||  | ||||| || || || |||| ||||||  |||  |||||||| | ||| ||||||||| ||||     
T  42898233 gtgcacacaagttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatga 42898134  T
Q  214 agttgaagattctgatctctttgaaaccctttgctacatatttcaca 260  Q
    |||||||||||||||||||||||||| |||||| |||| || |||||    
T  42898133 agttgaagattctgatctctttgaaatcctttgttacagatctcaca 42898087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 37 - 324
Target Start/End: Original strand, 5435530 - 5435817
Alignment:
Q  37 cactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggac 136  Q
    ||||| |||||||| || || |||||||||||||| |||||||| |||||||| || ||||| || ||||||| || ||||||||   |    || ||||    
T  5435530 cacttcttctcaccgtgcttcctacaaaagtgcttctttatccctgttaaatctcccaaagcccttgaaggatgattatgaacacggattttctctggac 5435629  T
Q  137 aaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttg 236  Q
    | ||||| || || ||||| |||| |||||||| ||||||| |||| ||||| ||||| |||||||| | || ||| ||||||||||| ||||| |||||    
T  5435630 acacatacactctcttccttatttttttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccctttg 5435729  T
Q  237 aaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttggtgacagagcaatcacctctgcttctggatct 324  Q
    |||  | ||   ||| ||||||||||| ||||||||||| |||| ||| | | ||||||| | ||  ||||| |||||||| ||||||    
T  5435730 aaaatcctttagacaaatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggatct 5435817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 40040824 - 40040758
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatccc 80  Q
    |||||||||| || ||||| |||||||| |||||||| || ||||||| ||||||||||||||||||    
T  40040824 tcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaagtgcttttttatccc 40040758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 30518250 - 30518505
Alignment:
Q  25 ttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaag 124  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||| |  || || ||||||||||| || |||||||    
T  30518250 ttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaag 30518349  T
Q  125 taggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagatt 224  Q
    |    || ||||| |||||||| || ||| | ||||||||  ||| ||| ||  | || |||||||| ||||||||||| | |||||| |||||||||||    
T  30518350 ttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagatt 30518449  T
Q  225 ctgatctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagcca 280  Q
     |||||||||||||| ||||| | |||| |||||||||  ||||||||||||||||    
T  30518450 ttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagcca 30518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 22085597 - 22085730
Alignment:
Q  14 tcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatg 113  Q
    |||| ||||| || ||||| |||||||| ||||||||||||||||||| | | || || ||||| || || ||||| || |||||||||||||| |||||    
T  22085597 tcttggaacacttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcctgtcaaatctcccaaagctctagaaggttcatg 22085696  T
Q  114 atgaacacaagtaggttcaggacaaacataaacc 147  Q
     || ||||||||    |||||||| |||||||||    
T  22085697 gtgcacacaagtcttctcaggacacacataaacc 22085730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 316
Target Start/End: Complemental strand, 39683245 - 39683101
Alignment:
Q  172 ctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttcacacacaaatctgt 271  Q
    |||||||||| ||| |||||||||| ||| || |||||||  |||||| |||||| | | | |||||| |||||| ||||||||||||||||||||| ||    
T  39683245 ctttgtctcaattttcatggtagatcatgaccccttctataaagttgatgattcttacccccttgaaatcctttgttacatatttcacacacaaatcagt 39683146  T
Q  272 ttgtagccaacaacgttgttggtgacagagcaatcacctctgctt 316  Q
    | ||||| | |||| ||||| ||||||||||||||||||||||||    
T  39683145 tcgtagctatcaacattgttagtgacagagcaatcacctctgctt 39683101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 322
Target Start/End: Complemental strand, 12106126 - 12105837
Alignment:
Q  34 ttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcag 133  Q
    |||||||| |||||||  ||||| ||| ||||||||||||||||||| |||||||| || | ||| || ||||||| || ||||||||  ||    || |    
T  12106126 ttccacttattctcactgtgtttcctataaaagtgcttttttatccctgttaaatctcccatagcccttgaaggatgattatgaacacgggtcttctctg 12106027  T
Q  134 gacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctct 233  Q
    |||| ||||| || || ||||| ||||||||||||| ||||||| |||| ||||| ||||| |||| ||| | || ||| ||||||||||| ||||  ||    
T  12106026 gacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcct 12105927  T
Q  234 ttg-aaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttggtgacagagcaatcacctctgcttctggat 322  Q
    ||| ||| |||||   ||| ||||||||||| ||||||||||| |||| ||| | | ||||||| | ||  ||||| |||||||| ||||    
T  12105926 ttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggat 12105837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 322
Target Start/End: Original strand, 46987821 - 46988110
Alignment:
Q  34 ttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcag 133  Q
    |||||||| |||||||  || || |||||||||||||| |||||||| |||||||| || | ||| || ||||||| || ||||||||  ||    || |    
T  46987821 ttccacttattctcactgtggttcctacaaaagtgcttctttatccctgttaaatctcccagagcccttgaaggatgattatgaacacgggtcttctctg 46987920  T
Q  134 gacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctct 233  Q
    |||| ||||| || || ||||| ||||||||||||| ||||||| |||| ||||| ||||| |||| ||| | || ||| ||||||||||| ||||  ||    
T  46987921 gacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcct 46988020  T
Q  234 ttg-aaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttggtgacagagcaatcacctctgcttctggat 322  Q
    ||| ||| |||||   ||| ||||||||||| ||||||||||| |||| ||| | | ||||||| | ||  ||||| |||||||| ||||    
T  46988021 ttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccatcaatggttttggtgataaagatatcacttctgcttcaggat 46988110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 39683523 - 39683468
Alignment:
Q  91 cctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaacataaacc 147  Q
    |||||||||||||| | |||||||||||||||||| | |||||||||||||||||||    
T  39683523 cctaaagctctagatg-atcatgatgaacacaagttgattcaggacaaacataaacc 39683468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 52248460 - 52248506
Alignment:
Q  28 tcacatttccactttttctcaccatgttttctacaaaagtgcttttt 74  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||    
T  52248460 tcacatttccatttcttctcaccatgctttctacaaaagtgcttttt 52248506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 44150905 - 44151170
Alignment:
Q  28 tcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtag 127  Q
    ||||||||||| || |||||||||||||| |  | ||| || ||||| || ||||| |  |||||||| |||| ||| |||| ||| ||||| || |  |    
T  44150905 tcacatttccatttcttctcaccatgtttgcggctaaaatgttttttgattccagtaaggtcacctaatgctcgagatggattatggtgaacgcatgatg 44151004  T
Q  128 gttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctg 227  Q
    | ||||| || ||||| ||| ||||| | |  |||  ||||| |||||| || ||||||||||| ||||| || |||||||  ||||  |||||||||||    
T  44151005 gctcagggcacacatacacctttttcttcacctctgcacttgttctttgcctaagtttccatggaagattgtgacctcttcggtgtaactgaagattctg 44151104  T
Q  228 atctctttgaaaccctttgctacatatttcacacacaaatctgtttgtagccaacaacgttgttgg 293  Q
     || || ||||| || ||| ||||||| |||||||||||||| ||||| ||||  || ||||||||    
T  44151105 gtccctctgaaaacccttgttacatatctcacacacaaatctatttgttgccattaatgttgttgg 44151170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 40749255 - 40749182
Alignment:
Q  184 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttgctacatatttc 257  Q
    ||||||||||| || || ||||||||||| || |||||||||||||||||||| || |||||| | ||||||||    
T  40749255 ttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttgttgcatatttc 40749182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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