View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-11 (Length: 530)
Name: NF2811R-Insertion-11
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 38674775 - 38674373
Alignment:
| Q |
8 |
acaacaatctattcactcctaactcttgcgccaaaaccgttcgataaaattccccaactaaattcaacgccgtcagaaccaaatccaatcaacagtcgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
38674775 |
acaacaatctattcactcctaactcttgcgccaaaaccgttcgataaaatcccccaactaaatccaacgtcgtcagaaccaaatccaatcaacagtcgaa |
38674676 |
T |
|
| Q |
108 |
gaagatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagcactgaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674675 |
gaagatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagcactgaa |
38674576 |
T |
|
| Q |
208 |
cactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgcggccg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38674575 |
cactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgccgccg |
38674476 |
T |
|
| Q |
308 |
gcatgaccgctaaccaccccgattatgcatccgtcagttttcactttcccgccnnnnnnnaggttctattgttttaacaactttatcttgttccgatgat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38674475 |
gcatgaccgctaaccaccccgattatgcatccgtcagttttcactttcccgcctttttttaggttctattgttttaacaactttatcttgttccgatgat |
38674376 |
T |
|
| Q |
408 |
gaa |
410 |
Q |
| |
|
||| |
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|
| T |
38674375 |
gaa |
38674373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 38670072 - 38669857
Alignment:
| Q |
137 |
gtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagcactgaacactgtgaccctgttttagtcgctcagaa |
236 |
Q |
| |
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|||||||||||||||| || ||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||| ||||||||| || ||| |||| |
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| T |
38670072 |
gtcaagaggcggttcattt-gacaagataacggctagattgaa-aaacttagttatggtttaagcactgaacactgg--ccctgttttggttgcttagaa |
38669977 |
T |
|
| Q |
237 |
agtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgcggccggcatgaccgctaaccaccccgattatgca |
336 |
Q |
| |
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|||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | | |||| ||||||||| ||||| |||||||| |
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| T |
38669976 |
agtttgcgccggcatttacaaaggcgttgccaccagtcaacttgatgaattagccgctgaaaccaccgttggcaagaccgctaatcaccctgattatgct |
38669877 |
T |
|
| Q |
337 |
tccgtcagttttcactttcc |
356 |
Q |
| |
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|| |||||||||| |||||| |
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| T |
38669876 |
tctgtcagttttcgctttcc |
38669857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 38674335 - 38674253
Alignment:
| Q |
448 |
attgattcagttggctgctacgattgctgtttcaaatctgcacaagaacacactgaaatcctcttctgaaacgtgagtgggtg |
530 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38674335 |
attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatccttttctgaaacgtgagtgggtg |
38674253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 38669779 - 38669697
Alignment:
| Q |
448 |
attgattcagttggctgctacgattgctgtttcaaatctgcacaagaacacactgaaatcctcttctgaaacgtgagtgggtg |
530 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
38669779 |
attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatcgtttgctgaaacgtgagtgggtg |
38669697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 103 - 341
Target Start/End: Complemental strand, 2062177 - 2061939
Alignment:
| Q |
103 |
tcgaagaagatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagca |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
2062177 |
tcgaagaagatgtacgttgtggagagagatggtcgtcaagaggcggttcgttttgacaagataacggcgaggttgcagaaactcagttacggtttaagca |
2062078 |
T |
|
| Q |
203 |
ctgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgc |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |
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| T |
2062077 |
ctgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccaccactcaacttgatgaattagccgctgaaaccgc |
2061978 |
T |
|
| Q |
303 |
ggccggcatgaccgctaaccaccccgattatgcatccgt |
341 |
Q |
| |
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| T |
2061977 |
cgctggcatgaccgctaaccaccccgattatgcatccgt |
2061939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 2061565 - 2061495
Alignment:
| Q |
449 |
ttgattcagttggctgctacgattgctgtttcaaatctgcacaagaacacactgaaatcctcttctgaaac |
519 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2061565 |
ttgattcagttggctggtaggattgctgtttcaaatctgcacaagaacacactggaatccttttctgaaac |
2061495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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