View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-12 (Length: 460)
Name: NF2811R-Insertion-12
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 89 - 460
Target Start/End: Original strand, 24628446 - 24628817
Alignment:
| Q |
89 |
tgtcaattttatctaatctaaatattatttaaactatatgatgatatgatgtttggctggctcccactcccattgtattgtactagactactagtgtccc |
188 |
Q |
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| T |
24628446 |
tgtcaattttatctaatctaaatattatttaaactatatgatgatatgatgtttggctggctcccactcccattgtattgtactagactactagtgtccc |
24628545 |
T |
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| Q |
189 |
cattttgtaatctaagtaaaaacaaagtggtaatagtgccaagagagtaaacaaaagtgactttaattttctttatctgtttatagaaattccaatgtga |
288 |
Q |
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| T |
24628546 |
cattttgtaatctaagtaaaaacaaagtggtaatagtgccaagagagtaaacaaaagtgactttaattttctttatctgtttatagaaattccaatgtga |
24628645 |
T |
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| Q |
289 |
ccaattattgtgattattccatatgatctgaatgnnnnnnnnnnnntgtaaatgttgcagagagattatgcacgccatgtggaagccacaaaaattcaag |
388 |
Q |
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| T |
24628646 |
ccaattattgtgattattccatatgatctgaatgaaaaagaaaaaatgtaaatgttgcagagagattatgcacgccatgtggaagccacaaaaattcaag |
24628745 |
T |
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| Q |
389 |
tacatatatttgatggcaactttatacgttttcacattaacgattccttctgccactgctgtttattgggcc |
460 |
Q |
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| T |
24628746 |
tacatatatttgatggcaactttatacgttttcacattaacgattccttctgccactgctgtttattgggcc |
24628817 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 24628376 - 24628422
Alignment:
| Q |
9 |
ctaatattatattgctaagatggagtatcaagtaattaaataatgta |
55 |
Q |
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| T |
24628376 |
ctaatattatattgctaagatggagtatcaagtaattaaataatgta |
24628422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 4534742 - 4534837
Alignment:
| Q |
343 |
ttgcagagagattatgcacgccatgtggaagccacaaaaattcaagtacatatatttgatggcaactttatacgttttcacattaacgattccttc |
438 |
Q |
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| T |
4534742 |
ttgcagagagattatgcatgcaatgtggaaacctcaaaagttcaagtacatatattttctggcaactttgtacgttttcacattaacgattccttc |
4534837 |
T |
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