View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-13 (Length: 352)
Name: NF2811R-Insertion-13
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-13 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 51418758 - 51418415
Alignment:
| Q |
9 |
gatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttggtccacctcaaacacctcctcaaccgtctccctttt |
108 |
Q |
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| T |
51418758 |
gatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttgatccacctcaaacacctcctcaaccgtctccctttt |
51418659 |
T |
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| Q |
109 |
cgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgcaaccggagataatagcttcctcctacta |
208 |
Q |
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| T |
51418658 |
cgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgccaccggagataatagcttcctcctacta |
51418559 |
T |
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| Q |
209 |
ctgtttacaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacg |
308 |
Q |
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| T |
51418558 |
ctgtttgcaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaaatacatatcagcatcacgtggacggcacg |
51418459 |
T |
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| Q |
309 |
tgagtgcttcatggtgcttcaccatcacgttgttcagtgctttc |
352 |
Q |
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| T |
51418458 |
tgagtgcttcatggtgcttcaccatcacgttgttcagtgctttc |
51418415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 51413534 - 51413362
Alignment:
| Q |
183 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
279 |
Q |
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| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
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| Q |
280 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttc |
352 |
Q |
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| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttc |
51413362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
183 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
278 |
Q |
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| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
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| Q |
279 |
aatacatatc |
288 |
Q |
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| T |
51416481 |
aatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 51413711 - 51413645
Alignment:
| Q |
9 |
gatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttggtc |
75 |
Q |
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| T |
51413711 |
gatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtc |
51413645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 51416639 - 51416582
Alignment:
| Q |
108 |
tcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccg |
165 |
Q |
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| T |
51416639 |
tcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccg |
51416582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
257 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgctt |
327 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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