View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-14 (Length: 351)
Name: NF2811R-Insertion-14
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 29446041 - 29445828
Alignment:
| Q |
8 |
aaattaaaccactaagatctatgtttggattgatggattagaatggagtgaaatgaaatcaagtggtattaaacaagataataatgtttggatttaaaag |
107 |
Q |
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| T |
29446041 |
aaattaaaccactaagatctatgtttggattgatggattagaatggagtgaaatgaaatcaagtggtattaaacaagataatattgtttggatttaaaag |
29445942 |
T |
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| Q |
108 |
agtcgtatgaaaaagatgatggaatccatttcattccatcctcttctattagtttccattccttctaatttaggataggagatatgcaatggaatgagac |
207 |
Q |
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| T |
29445941 |
agtcgtatgaaaaagatgatggaatccatttcattccatcctcttctattagtttccattccttctaatttaggataggagatatgcaatggaatgagac |
29445842 |
T |
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| Q |
208 |
atcttaattaaata |
221 |
Q |
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| T |
29445841 |
atcttaattaaata |
29445828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 29420929 - 29421006
Alignment:
| Q |
139 |
cattccatcctcttctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
221 |
Q |
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| T |
29420929 |
cattccatcttcttcccttaatttccattccttctaatttagg-----agatatgcaatagaatgagatatcttaattaaata |
29421006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 29420808 - 29420884
Alignment:
| Q |
30 |
gtttggattgatggattagaatggagtgaaatgaaatcaagtggtattaaacaagataataatgtttggatttaaaa |
106 |
Q |
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| T |
29420808 |
gtttggattgataaaatagaatggagttgaatgaaatcgagttgtactaagcaagattatattggttggatttaaaa |
29420884 |
T |
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