View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-18 (Length: 128)
Name: NF2811R-Insertion-18
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 24563684 - 24563565
Alignment:
| Q |
9 |
gagttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctc |
108 |
Q |
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| T |
24563684 |
gagttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggatcacactgttatctc |
24563585 |
T |
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| Q |
109 |
aaaagctttggaagatatct |
128 |
Q |
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| T |
24563584 |
aaaagctttggaagatatct |
24563565 |
T |
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Target: chr8 (Bit Score: 70; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
12 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
109 |
Q |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
12 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
70 |
Q |
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| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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