View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811R-Insertion-2 (Length: 980)
Name: NF2811R-Insertion-2
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 159 - 532
Target Start/End: Complemental strand, 2919075 - 2918706
Alignment:
| Q |
159 |
tataaaagaatattccttattttactataagtatcaatcacttctaccaaatatatcaagaccacaaacaaaattattagggtttttgttgcgactctct |
258 |
Q |
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| T |
2919075 |
tataaaagaatattccttattttactataagtatcaatcacttctaccaaatatatcaagaccgcaaacaaaattattagggtttttgttgcgactctct |
2918976 |
T |
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| Q |
259 |
tttgagtttatttaaatctcttataatatgaaggataaaaaagaaaatcgattacactggaaactgtagtgtataaagatgattcataaagacttaaacc |
358 |
Q |
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| T |
2918975 |
tttgagtttatttaaatctcttataatatgaagcttaaaaaagaaaatcgattacactggaaactgtactgtataaagatgattcagaaagactcaaacc |
2918876 |
T |
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| Q |
359 |
ttatgcaaaacacgattaggatcctcacatgttgaataaaacacgtagaaataacgtggaacaccttacatccttaaaatctaaataggagagagttttg |
458 |
Q |
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| T |
2918875 |
ttatgcaaaacatgattaggatcctcacatgttgaataaaacacgtagaaataatgtggaacacctgacatccttaaaatctaaatagaagagagttttg |
2918776 |
T |
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| Q |
459 |
ggatttgaaaagaaaatggaaaaacgacggttaagggttgaaattttaattaaacttgaaataaaaataagagg |
532 |
Q |
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| T |
2918775 |
gaatttgaaaagaaaatggaaaaacgatggttaagggttgaaatt----ttaaacttgaaataaaaataagagg |
2918706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 542 - 761
Target Start/End: Complemental strand, 2918618 - 2918402
Alignment:
| Q |
542 |
ccattttatttgagatgattcttcgtttggcatatattagtacttcacatataaatgggaagactaatatttaggttaacacaactatacatgtgagact |
641 |
Q |
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| T |
2918618 |
ccattttatttgagatgattctttgtttggcatatattagtacttcacatataaatgggaagactaatatttaggttaacacaactatacatgtgagact |
2918519 |
T |
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| Q |
642 |
gaattcaaactttaaacttgtaattcaaaccatctaattatttgatcccttgagataccaaattatggatgaaatttttggaagtattagagctggacaa |
741 |
Q |
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| T |
2918518 |
gaattcaaactttaaactcgtaattcaaaccatctaattatttgatcccttgagataccaaattatg---gaaatgtttggaagtattagagctggacaa |
2918422 |
T |
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| Q |
742 |
tcaagaatgaaccataaact |
761 |
Q |
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| T |
2918421 |
tcaagaatgaaccataaact |
2918402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 2919198 - 2919081
Alignment:
| Q |
9 |
gattgaaccttgtgattgagttatataatatgtgtgcactacattgtaatagtgaccttgataattgataatattaaaatgttt-----ctttgagttat |
103 |
Q |
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| T |
2919198 |
gattgaaccttgtgcttgagttatataatatgtgtgcactacattgtaatagtgaccttga-------taatattaaaatgtttttgtactttgagttat |
2919106 |
T |
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| Q |
104 |
ataagtatcgatgcttcttttcatg |
128 |
Q |
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| T |
2919105 |
ataagtatcgatgcttcttttcatg |
2919081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 2933988 - 2933924
Alignment:
| Q |
9 |
gattgaaccttgtgattgagttatataatatgtgtgcactacattgtaatagtgaccttgataat |
73 |
Q |
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| T |
2933988 |
gattgaaccttgtgattgagttatataatatgtgtgcactacattgtaatagtgaccttgataat |
2933924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 787 - 879
Target Start/End: Complemental strand, 2918379 - 2918293
Alignment:
| Q |
787 |
atttttgatgtcattcatccacaagttgtgtctgggaccacagaaattaaattatttgcccgtacaataattattttcaatattatgttttgt |
879 |
Q |
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| T |
2918379 |
atttttgatgtcattcatccacaagttgtgtct-ggaccacagaaatt-aattagttg-ccgtac---aattattttcaatattatgttttgt |
2918293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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