View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811R-Insertion-3 (Length: 966)
Name: NF2811R-Insertion-3
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-3 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
| [»] scaffold0406 (2 HSPs) |
| | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 764; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 9 - 949
Target Start/End: Original strand, 22055012 - 22055945
Alignment:
| Q |
9 |
agttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcataccattcaagaggttaaaagc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22055012 |
agttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcttaccattcaagaggttaaaagc |
22055111 |
T |
|
| Q |
109 |
ttcagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcatattttccgatgaaagcactctctaaatcagagtatttgtgcatagatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055112 |
ttcagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcgtattttccgatgaaagcactctctaaatcagagtatttgtgcatagatg |
22055211 |
T |
|
| Q |
209 |
catactggtttgaagactttatttacgaggtattttttattatgaatatgatgcatgcttatctaacaccgacaattcatattaaatgtatgttgaaaat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22055212 |
catactggtttgaagactttatttacgaggtatgttttattatgaatatgatgcatgcttatctaacaccgacacttcatattaaatgtatgttgaaaat |
22055311 |
T |
|
| Q |
309 |
gtggcgatgtccaacatatttacatgttttgtccgtttccaacacgattggtaaaatatagtgtaggagctagtggtagagtggtttaatgttatcgaca |
408 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22055312 |
gtggcgatgtccaacat--------gttttgtcggtgtccaacacggttggtaaaatatagtgtcggagctagtggtagagtggtt-aatgttatcgaca |
22055402 |
T |
|
| Q |
409 |
agagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgacgata |
508 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
22055403 |
agagaacaaacactggtaattagctccatgtatgaggaaataatataatatggtgaagccttcaatattatcgacattgcatctgaaaggcttgactaca |
22055502 |
T |
|
| Q |
509 |
attgcaccatttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagat |
608 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055503 |
attgcaccattccagtctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagat |
22055602 |
T |
|
| Q |
609 |
gtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatt |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055603 |
gtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaaatttaagctattatagttttctctaatagacattgtcatatt |
22055702 |
T |
|
| Q |
709 |
tttaactatattattttagagatatgtatcaatttcaacacccctatttaatatatgtttcgaaaactccaaatctagtacatagtagctcaaacatgat |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055703 |
tttaactatattattttagagatatgtatcaatttcaacactcctccttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacatgat |
22055802 |
T |
|
| Q |
809 |
atcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatact |
908 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055803 |
atcatctcctcatgcattgatacttttcatagttgatcaattttacaagtgtta-cctctaccatgatagtaaatttgtgtcacatcttgccataatact |
22055901 |
T |
|
| Q |
909 |
tgtcgtttgtctctttgtt-gttatgt--gagacttatgtcata |
949 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
22055902 |
tgtcgtttgtctctttgttggttatgttgaagacttatgtcata |
22055945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 405 - 746
Target Start/End: Original strand, 22056480 - 22056815
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatc-gacattgcatctcaaaggcttga |
503 |
Q |
| |
|
|||||||| ||||| | | ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
22056480 |
gacaagaggacacatatttgtaattaactcattgtatgaggagagaatataatatggtgaagccttcaatagtatctgacattgcat-------gcttga |
22056572 |
T |
|
| Q |
504 |
cgataattgcaccatttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
603 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
22056573 |
atgcaattgcaccttttaagtctctttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatca |
22056672 |
T |
|
| Q |
604 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaacttt-aagctattatagttttctctaatagacattgt |
702 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||||||||||| || || |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
22056673 |
tagatgtttttaggctacaaattaatctagacattaacagaacaatctagaaatatgaagtaactttaaagctattatagttttctctaatagacactgg |
22056772 |
T |
|
| Q |
703 |
catatttttaactatattattttagagatatgtatcaatttcaa |
746 |
Q |
| |
|
|||| ||||||||| |||| ||| || ||||||||||||||||| |
|
|
| T |
22056773 |
cata-ttttaactagattactttggaaatatgtatcaatttcaa |
22056815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 22075813 - 22076020
Alignment:
| Q |
11 |
ttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcataccattcaagaggttaaaagctt |
110 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22075813 |
ttttagctggatgtccaattttggagtgtctacgagtgttcgatatatatttccctgaggaggacgaagattctcttaccattcaagaagttaaaagctt |
22075912 |
T |
|
| Q |
111 |
cagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcatattttccgatgaaagcactctctaaatcagagtatttgtgcatagatgca |
210 |
Q |
| |
|
|| ||| |||||||||||||||||||| |||||| ||||| || ||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
22075913 |
caacttacctaaattgactagagcaaatatcactcattttttgtgttcgtattttctgatgaaagcactctctgaatcagagtctttgtgcatagatgca |
22076012 |
T |
|
| Q |
211 |
tactggtt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
22076013 |
tactggtt |
22076020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 524 - 749
Target Start/End: Complemental strand, 29371948 - 29371712
Alignment:
| Q |
524 |
tctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta--------tagatgtttcta |
615 |
Q |
| |
|
|||||||||| ||||||||||||| || || |||| ||||||||||| |||||||||||||| |||||| ||||||| ||||||||| || |
|
|
| T |
29371948 |
tctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattattactagagtatagatgttttta |
29371849 |
T |
|
| Q |
616 |
ggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctatta----tagttttctctaatagacattgtcatattttt |
711 |
Q |
| |
|
| | ||| ||||||||||||||||| ||||||| | |||||| || |||| ||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
29371848 |
aggtgcaacttaatctagacattaatagaacaattaaaaaacatgtaacaacattaagctattatacttagtattctctaatagaaattgtcatattttt |
29371749 |
T |
|
| Q |
712 |
aactatattattttagagatatgtatcaatttcaacac |
749 |
Q |
| |
|
||||| | ||||||||| ||||||||| |||||||||| |
|
|
| T |
29371748 |
aacta-aatattttagaaatatgtatcgatttcaacac |
29371712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 614 - 739
Target Start/End: Complemental strand, 29373123 - 29372998
Alignment:
| Q |
614 |
taggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaa |
713 |
Q |
| |
|
|||||||||| |||||||||| |||| | ||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
29373123 |
taggctacaacttaatctagatattagtagaacaatctagaaacatgtagcaactttaaactattctataattctctaatagacattgtcatatttttaa |
29373024 |
T |
|
| Q |
714 |
ctatattattttagagatatgtatca |
739 |
Q |
| |
|
||| |||||| |||| | |||||||| |
|
|
| T |
29373023 |
ctaaattattctagaaacatgtatca |
29372998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 22064436 - 22064582
Alignment:
| Q |
150 |
ttggtcttcatattttccgatgaaagcactctctaaatcagagtatttgtgcatagatgcatactggt------ttgaagactttatttacgaggtattt |
243 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| | ||||||||| |||||||||||| | |
|
|
| T |
22064436 |
ttggtgttcgtattttccgatgaaagcactctctgaatccgagtctttgtgcatagatgcatactggttccacatagaagactttgtttacgaggtatgt |
22064535 |
T |
|
| Q |
244 |
tttattatgaatatgatgcatgcttatctaacaccgacaattcatat |
290 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||| |||| ||||||| |
|
|
| T |
22064536 |
tttagcatgaatatgatgcatgattatgaaacactgacacttcatat |
22064582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 405 - 748
Target Start/End: Original strand, 22622308 - 22622652
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
504 |
Q |
| |
|
|||||||| ||||| | || ||||||||| || || ||||||||||||| | ||||| | |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22622308 |
gacaagaggacacatattgtaaattagctcattctaggaggaaagaatatgaaatggtaatgcctacaatattattgacatggcatctcaaaggcttgaa |
22622407 |
T |
|
| Q |
505 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
603 |
Q |
| |
|
| ||||||||| || || | ||||||||| |||| |||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22622408 |
tacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatattg |
22622507 |
T |
|
| Q |
604 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtc |
703 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
22622508 |
tagatgtttttaggctacaatttaatctagatattaatagaacaatctagaaacatgtggcaactttaagctattatagttttttctaatagacattatc |
22622607 |
T |
|
| Q |
704 |
atatttttaactatattattttagagatatgtatcaatttcaaca |
748 |
Q |
| |
|
|| ||||||||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
22622608 |
attattttaactagaatattctagaaatatgtatcaatttcaaca |
22622652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 2e-79; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 361 - 693
Target Start/End: Complemental strand, 24853555 - 24853222
Alignment:
| Q |
361 |
aaaatatagtgtaggagctagtggtagagtggtttaatgttatcg-acaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatat |
459 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | || | ||||||| ||||| | ||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
24853555 |
aaaatatagtgtaggagctagtggtggagtg-tttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaatatgatat |
24853457 |
T |
|
| Q |
460 |
ggtgaagccttcaatattatcgacattgcatctcaaaggcttgacgataattgca-ccatttatgtctatttataggtgcttgaagatgattctagtact |
558 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| |||||||||| | ||||||| ||| || ||||||||||||||| | ||||||| || ||| ||| |
|
|
| T |
24853456 |
gatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaact |
24853357 |
T |
|
| Q |
559 |
agaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaaca |
658 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| || | |||||| |||||||||||||||| |
|
|
| T |
24853356 |
agaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggctataacttaatttatatattaatagaacaatctagaaaca |
24853257 |
T |
|
| Q |
659 |
tttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
||||| ||||||| | |||| |||||||||||||| |
|
|
| T |
24853256 |
tttagaaactttatgttattctagttttctctaat |
24853222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 361 - 748
Target Start/End: Complemental strand, 28787220 - 28786832
Alignment:
| Q |
361 |
aaaatatagtgtaggagctagtggtagagtggtttaatgttatcga-caagagaacacacactggtaattagctcgttgtatgaggaaagaatataatat |
459 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | || || |||||| ||||||| | ||||||| ||| || || ||||| | ||||| |||| |
|
|
| T |
28787220 |
aaaatatagtgtaggagctaatggtagagtggtt-agtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgatat |
28787122 |
T |
|
| Q |
460 |
ggtg---aagccttcaatattatcgacattgcatctcaaaggcttgacgataattgcaccatt-tatgtctatttataggtgcttgaagatgattctagt |
555 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||||||||| | |||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
28787121 |
ggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctaga |
28787022 |
T |
|
| Q |
556 |
actagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaa |
655 |
Q |
| |
|
|||| ||||| |||| |||||| | |||||| ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| |||||| ||||| |
|
|
| T |
28787021 |
acta--ataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaacttaatcgagacattaatataacaatttagaa |
28786924 |
T |
|
| Q |
656 |
acatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca |
748 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||| | |||||||| |||||||| | ||||||||| |||| |||||||||||||| |
|
|
| T |
28786923 |
acatgtagcaactttaagttattctagttttctctaata-aaattgtcattaatttaactagaatattttagaaatatatatcaatttcaaca |
28786832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 405 - 693
Target Start/End: Complemental strand, 51246787 - 51246498
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
504 |
Q |
| |
|
|||||||| ||||||| | | ||||||||| ||||| ||||| ||||||| || ||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
51246787 |
gacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaatattattgacattacatcccaaaggcttgaa |
51246688 |
T |
|
| Q |
505 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
603 |
Q |
| |
|
| ||||||||| || || ||||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||| | |||| ||||||||| |
|
|
| T |
51246687 |
tacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattatta |
51246588 |
T |
|
| Q |
604 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| || |||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
51246587 |
tagatgtttctaggctttaacttaacctagacattaatagagcaatctagaaacatctagcaactttgtattattctagttttctctaat |
51246498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 426 - 693
Target Start/End: Original strand, 17525443 - 17525713
Alignment:
| Q |
426 |
aattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgaca--ttgcatctcaaaggcttgacgataattgcac-catttat |
522 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | |||| ||| ||| || |
|
|
| T |
17525443 |
aattagctcattgtaggaggagagaatatgatatggtgaagccttcaatattattgacacattgcatctcaaaggcttgaatacaatttcacacatataa |
17525542 |
T |
|
| Q |
523 |
gtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctaca |
622 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||| |||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||| | |
|
|
| T |
17525543 |
gtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattattatagatgtttctaggcttta |
17525642 |
T |
|
| Q |
623 |
atttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
| |||| |||||||||||| ||| |||| |||||||| ||||||||||| | || | ||| |||||||||| |
|
|
| T |
17525643 |
acttaacctagacattaatagaataatcaagaaacatgtagcaactttatgttaatctagctttctctaat |
17525713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 472 - 641
Target Start/End: Complemental strand, 28788058 - 28787888
Alignment:
| Q |
472 |
aatattatcgacattgcatctcaaaggcttgacgataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctag |
570 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||| || |||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
28788058 |
aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctag |
28787959 |
T |
|
| Q |
571 |
gtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaat |
641 |
Q |
| |
|
| |||||||| |||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||| |||| |
|
|
| T |
28787958 |
gcctttgttttccttttgtacattagataattatagatatttctaggctacaacttaatcgagacaataat |
28787888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 405 - 693
Target Start/End: Complemental strand, 24856402 - 24856122
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
504 |
Q |
| |
|
||||||| ||||| | ||||||||||||| ||||| ||||| ||||||| |||||||||| | ||||||||||| |||||||||||| ||||||| || |
|
|
| T |
24856402 |
gacaagatgacacatattggtaattagctcattgtaggaggagagaatatgatatggtgaaactttcaatattattgacattgcatcttaaaggctggaa |
24856303 |
T |
|
| Q |
505 |
gataattgca-ccatttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
603 |
Q |
| |
|
| ||||||| || || ||||||||||||||| | ||| ||| |||||| |||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
24856302 |
tacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctaggcctttgtttgcctttcctacatta-att---- |
24856208 |
T |
|
| Q |
604 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
||||| |||||| || |||| |||||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| |
|
|
| T |
24856207 |
----tgtttataggctttaacttaaactagacattaatagaacaatctagaaacatgtagcaactttaagttattctagatttctctaat |
24856122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 766 - 911
Target Start/End: Original strand, 6824128 - 6824280
Alignment:
| Q |
766 |
tttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagttgatcaattttacaag |
857 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| | |
|
|
| T |
6824128 |
tttcgaaaacttcaaatgtagtacgtagttgctcaaacatagatttgtgttatcatctcctcctgcattgaaactcttcatagttgatcaatttgacagg |
6824227 |
T |
|
| Q |
858 |
tgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
911 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||| ||||||||||||| |||| |
|
|
| T |
6824228 |
tgtta-gctccaccatgatagagaatttgtgccacctcttgccataatatttgt |
6824280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 766 - 911
Target Start/End: Original strand, 17525772 - 17525918
Alignment:
| Q |
766 |
tttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagttgatcaattttacaag |
857 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
17525772 |
tttcgaaaacttcaaatgtagtacgtagttgctcaaacatagattttcgctatcatctcctcttgcattgatactcttcatagttgatcaatttgacagg |
17525871 |
T |
|
| Q |
858 |
tgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
911 |
Q |
| |
|
||| ||||||||||| ||||||||| ||| ||||||||||||| |||| |
|
|
| T |
17525872 |
tgt-------taccatgataggaaatttgtgccacctcttgccataatatttgt |
17525918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 817 - 911
Target Start/End: Complemental strand, 28787760 - 28787667
Alignment:
| Q |
817 |
ctcctgcattgatactcttcatagttgatcaattttacaagtgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| | || || || | |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
28787760 |
ctcctgcattgatactcttcatagttgatcaatttgacaggtgtta-catccactataacagtaaatttgtgtcacctcttgccataatatttgt |
28787667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 132; Significance: 5e-68; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 6704 - 6449
Alignment:
| Q |
11 |
ttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcataccattcaagaggttaaaagctt |
110 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| | |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6704 |
ttttagctggatgtccatttttggagaatctacgactttctgatatatttttccctgaggaggaagaagattctgttaccattcaagaggttaaaagctt |
6605 |
T |
|
| Q |
111 |
cagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcatattttccgatgaaagcactctctaaatcagagtatttgtgcatagatgca |
210 |
Q |
| |
|
|| ||| ||||||||||||| |||||| ||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
6604 |
catcttacctaaattgactatagcaaatatca--cgtttttggtgttcatattttcagatgaaagcactctataaatcagagtgtttgtgcatagatgca |
6507 |
T |
|
| Q |
211 |
tactggt------ttgaagactttatttacgaggtattttttattatgaatatgatgc |
262 |
Q |
| |
|
|||||| | ||| ||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
6506 |
cactggttcaacatagaatactttgtttacgaggtatgttttattattaatatgatgc |
6449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 405 - 693
Target Start/End: Complemental strand, 6445 - 6156
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
504 |
Q |
| |
|
||||||| ||||||| | | ||||||||| || || ||||| | ||||| || | ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6445 |
gacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgcatctcaaaggcttgaa |
6346 |
T |
|
| Q |
505 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
603 |
Q |
| |
|
| |||| |||| || || |||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||| | | || ||||||||| |
|
|
| T |
6345 |
tacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatctgcacaagattatta |
6246 |
T |
|
| Q |
604 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
6245 |
tagatgtttctaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
6156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 766 - 911
Target Start/End: Complemental strand, 6097 - 5945
Alignment:
| Q |
766 |
tttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagttgatcaattttacaag |
857 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||| ||| | |
|
|
| T |
6097 |
tttcgaaaacttcaaatgtagtacttagttgctcaaacatagatttgtgctatcatcccctcctgcattgaaactcttcgtagttgatcaatttgacagg |
5998 |
T |
|
| Q |
858 |
tgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
911 |
Q |
| |
|
||||| |||| |||||||||| ||||||||| || | ||||||||||| |||| |
|
|
| T |
5997 |
tgtta-cctccaccatgatagaaaatttgtgacatctattgccataatatttgt |
5945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 436 - 904
Target Start/End: Original strand, 1275163 - 1275635
Alignment:
| Q |
436 |
ttgtatgaggaaagaatataatatggtgaagccttc--aatattatcgacattgcatctcaaaggcttgacgataattgcacc-atttatgtctatttat |
532 |
Q |
| |
|
||||||||| | |||| || || |||||||||||| |||||||| |||||||||||| ||| | |||| | ||||||||| || || | || |||| |
|
|
| T |
1275163 |
ttgtatgagaagagaacatgatttggtgaagcctttttaatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttat |
1275262 |
T |
|
| Q |
533 |
aggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatcta |
632 |
Q |
| |
|
|||||||||||| || |||||| |||||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||| || ||||| || |
|
|
| T |
1275263 |
aggtgcttgaaggtgtttctagaactagatt---ctaggcctttgtttgccatttctacattagattattatagatgtttctaagctataacttaattta |
1275359 |
T |
|
| Q |
633 |
gacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagata |
732 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||| || |||| |||||||||||||||||| | || ||| ||||||| | ||| |||| ||| |
|
|
| T |
1275360 |
tacattaataaaataatctagaaacatgtagcaactttgagttattctagttttctctaatagacgtcgttata---ttaactagaaaattctagaaata |
1275456 |
T |
|
| Q |
733 |
tgtatcaatttcaacacccctatttaatatatgtttcgaaaactccaaatctagtacatagtagctcaaaca--------tgatatcatctcctcctgca |
824 |
Q |
| |
|
||||||||||||||||| ||| || || || |||| ||||||||||| || | | |||| ||||||||| ||||||||||| |||| || |
|
|
| T |
1275457 |
tgtatcaatttcaacactcctccttgatgcatatttcagaaactccaaatgtaatgcgtagttgctcaaacatagatttgtgatatcatcttttcctaca |
1275556 |
T |
|
| Q |
825 |
ttgatactcttcatagttgatcaattttacaagtgttaccctctaccatgatagtaaatttgtgtcacatcttgccataa |
904 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||| |||| |||||||||||| |||||||| || |||||| |||| |
|
|
| T |
1275557 |
ttgatactcttcatagttgattaatttgacaagtctta-cctccaccatgatagtacatttgtgttacctcttgctataa |
1275635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 405 - 693
Target Start/End: Complemental strand, 5046621 - 5046324
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------a |
496 |
Q |
| |
|
||||| || |||| || |||||| |||||| ||||| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
5046621 |
gacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatctcaatggcttaaa |
5046522 |
T |
|
| Q |
497 |
ggcttgacgataattgcac-catttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacatta |
595 |
Q |
| |
|
||||||| | |||||||| ||| || ||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| | |||| | |
|
|
| T |
5046521 |
ggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaa |
5046422 |
T |
|
| Q |
596 |
gattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| |||||||||| | |||| |||||||||||||| |
|
|
| T |
5046421 |
gattattatagatgtttctaggctttaacttaacctagacattaataaaacaatctataaacatgaagcaactttatgttattctagttttctctaat |
5046324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 524 - 746
Target Start/End: Original strand, 5663802 - 5664022
Alignment:
| Q |
524 |
tctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaa |
623 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663802 |
tctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaa |
5663901 |
T |
|
| Q |
624 |
tttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat-agacattgtcatatttttaactatattat |
722 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||| |||||||||||||||| | ||| ||||||| || |||||||||||| |||||||||| | ||| |
|
|
| T |
5663902 |
tttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag-tttctctgatcagacattgtcat-tttttaactagaatat |
5663998 |
T |
|
| Q |
723 |
tttagagatatgtatcaatttcaa |
746 |
Q |
| |
|
| || | ||||||||||||||||| |
|
|
| T |
5663999 |
tctaaaaatatgtatcaatttcaa |
5664022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 405 - 693
Target Start/End: Complemental strand, 5047392 - 5047095
Alignment:
| Q |
405 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------a |
496 |
Q |
| |
|
||||| || |||| || |||||| |||||| ||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||| |||| | |
|
|
| T |
5047392 |
gacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatttcaatggcttaaa |
5047293 |
T |
|
| Q |
497 |
ggcttgacgataattgcac-catttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacatta |
595 |
Q |
| |
|
||||||| | |||||||| ||| || || |||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| | || | | |
|
|
| T |
5047292 |
ggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaa |
5047193 |
T |
|
| Q |
596 |
gattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|||||||||||||| ||| ||||| || |||| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
5047192 |
gattattatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
5047095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 436 - 693
Target Start/End: Complemental strand, 5048132 - 5047866
Alignment:
| Q |
436 |
ttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------aggcttgacgataattgcac-catttatgtct |
526 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||||| || |||||||| | |||||||| ||| || || | |
|
|
| T |
5048132 |
ttgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatcttaatggcttaaaggcttgaatacaattgcactcatataagtat |
5048033 |
T |
|
| Q |
527 |
atttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaattt |
626 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||||||||||| ||||||||||||| | |||| ||||||||||||||| ||| ||||| || || |
|
|
| T |
5048032 |
atttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaagattattatagatggttcaaggctttaactt |
5047933 |
T |
|
| Q |
627 |
aatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
5047932 |
aacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
5047866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 808 - 883
Target Start/End: Complemental strand, 5047757 - 5047683
Alignment:
| Q |
808 |
tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttaccctctaccatgatagtaaat |
883 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||| |||| |
|
|
| T |
5047757 |
tatcatctcctcctgcattgatactcttcatagttgatcaatttgacaggtgtta-cctccaccatgatagaaaat |
5047683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 808 - 883
Target Start/End: Complemental strand, 5046986 - 5046912
Alignment:
| Q |
808 |
tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttaccctctaccatgatagtaaat |
883 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||| |||| |
|
|
| T |
5046986 |
tatcatatccttctgcattgatactcttcatagttgatcaatttgacaggtgtta-cctccaccatgatagaaaat |
5046912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 840 - 911
Target Start/End: Original strand, 5664125 - 5664195
Alignment:
| Q |
840 |
gttgatcaattttacaagtgttaccctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
911 |
Q |
| |
|
|||||||||||| |||||||||||| || ||| |||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
5664125 |
gttgatcaatttgacaagtgttacc-tccaccgtgatagtaaatttgtgtcacttcttgtcataatatttgt |
5664195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 488
Target Start/End: Complemental strand, 15063226 - 15063186
Alignment:
| Q |
448 |
agaatataatatggtgaagccttcaatattatcgacattgc |
488 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
15063226 |
agaatatgatatggtgaagccttcaatattattgacattgc |
15063186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 447 - 693
Target Start/End: Complemental strand, 12739473 - 12739218
Alignment:
| Q |
447 |
aagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgacg--------ataattgca-ccatttatgtctatttataggtg |
537 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |||||||||||||||||||| | | | ||||||| ||| || ||||||||||| || |
|
|
| T |
12739473 |
aagaatatgatttggtgaagccttcaatattattaacattgcatctcaaaggcttaaaggcttgaatacaattgcatccaaataattctatttatagatg |
12739374 |
T |
|
| Q |
538 |
cttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacat |
637 |
Q |
| |
|
|||| ||||| |||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| || |||| ||||| || |
|
|
| T |
12739373 |
cttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaagattattatagatgtttctaggctgtaacttaacctagatat |
12739274 |
T |
|
| Q |
638 |
taattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| | |||| || ||||||||||| |
|
|
| T |
12739273 |
taatagaacaatctagaaacatgtagcaactttatgttattctaattttctctaat |
12739218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 424 - 689
Target Start/End: Complemental strand, 12738345 - 12738071
Alignment:
| Q |
424 |
gtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaa--------ggcttgacgataattgcac |
515 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||||| || ||||||||||||||||||||| | ||||||||||||| ||||||| | |||||||| |
|
|
| T |
12738345 |
gtaataagctcattgtaggagaagagaatatgatttggtgaagccttcaatattatttagattgcatctcaaaagcttaaaggcttgaatacaattgcac |
12738246 |
T |
|
| Q |
516 |
c-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttct |
614 |
Q |
| |
|
| | || || |||||||||||||||| ||||| |||||| |||| ||| ||||||| |||||||||||||| |||| |||| ||||| ||||||||| |
|
|
| T |
12738245 |
ccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaagataattattgatgtttct |
12738146 |
T |
|
| Q |
615 |
aggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
689 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||| |||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
12738145 |
aggctttaccttaatctagacattaatagaacaatctacaaacatgtagcaactttatgttattttagttttctc |
12738071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 525 - 693
Target Start/End: Complemental strand, 15023103 - 15022936
Alignment:
| Q |
525 |
ctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaat |
624 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| ||||||||||| |||||||||||| | |||| |||||||||||||||||| ||| || || |
|
|
| T |
15023103 |
ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgtttttagactttaac |
15023004 |
T |
|
| Q |
625 |
ttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
| || ||| |||||||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||| |
|
|
| T |
15023003 |
tgaacctaaacattaatagaacaatctagaaacatatagc-actttatgttattctagttttctctaat |
15022936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 603 - 748
Target Start/End: Complemental strand, 1896865 - 1896721
Alignment:
| Q |
603 |
atagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgt |
702 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| ||| ||||||| || |||||| | |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1896865 |
atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttt-tctaatagacattgt |
1896767 |
T |
|
| Q |
703 |
catatttttaactatattattttagagatatgtatcaatttcaaca |
748 |
Q |
| |
|
||| |||| ||||| | |||| |||| |||| |||| ||||||||| |
|
|
| T |
1896766 |
cattttttaaactagaatattctagaaatatttatctatttcaaca |
1896721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 603 - 748
Target Start/End: Complemental strand, 1906311 - 1906167
Alignment:
| Q |
603 |
atagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgt |
702 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| ||| ||||||| || |||||| | |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1906311 |
atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttt-tctaatagacattgt |
1906213 |
T |
|
| Q |
703 |
catatttttaactatattattttagagatatgtatcaatttcaaca |
748 |
Q |
| |
|
||| |||| ||||| | |||| |||| |||| |||| ||||||||| |
|
|
| T |
1906212 |
cattttttaaactagaatattctagaaatatttatctatttcaaca |
1906167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 661 - 746
Target Start/End: Original strand, 2932826 - 2932912
Alignment:
| Q |
661 |
tagcaactttaagctattatagttttctctaatagacattgtca-tatttttaactatattattttagagatatgtatcaatttcaa |
746 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||| | |||| |||| ||||||||||||||||| |
|
|
| T |
2932826 |
tagcaactttaagctattctagttttttctaatagacattgtcattttttttaactagaatattctagaaatatgtatcaatttcaa |
2932912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 651 - 742
Target Start/End: Complemental strand, 1888751 - 1888660
Alignment:
| Q |
651 |
tagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatt |
742 |
Q |
| |
|
||||||||| |||||||||| ||||||| | ||||| |||||||||||||||||| |||||||||| | |||| |||| ||||| ||||||| |
|
|
| T |
1888751 |
tagaaacatgtagcaacttttagctattcttgttttttctaatagacattgtcatttttttaactagaatattctagaaatatgcatcaatt |
1888660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 12737509 - 12737445
Alignment:
| Q |
625 |
ttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
689 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
12737509 |
ttaatctagacattaatagaacaatctacaaacatgtagcaactttatgttattttagttttctc |
12737445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 805 - 851
Target Start/End: Complemental strand, 12739112 - 12739066
Alignment:
| Q |
805 |
tgatatcatctcctcctgcattgatactcttcatagttgatcaattt |
851 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
12739112 |
tgatatcagctcctcctgcattgatactctttatagatgatcaattt |
12739066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 436 - 693
Target Start/End: Original strand, 20978797 - 20979064
Alignment:
| Q |
436 |
ttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaagg--------cttgacgataattgcacc-atttatgtct |
526 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| || || || | |
|
|
| T |
20978797 |
ttgtaggaggagagaatatgatatggtgaagccttcaatattattgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt |
20978896 |
T |
|
| Q |
527 |
atttataggtgctt-gaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatt |
625 |
Q |
| |
|
|||||||||| ||| | ||||| |||||| |||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||||||| || | |
|
|
| T |
20978897 |
atttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatattattatagatgtttctaggctttaact |
20978996 |
T |
|
| Q |
626 |
taatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
693 |
Q |
| |
|
||| ||| |||| ||| ||||||||||||||||| ||| | ||||| | |||| || ||||||||||| |
|
|
| T |
20978997 |
taacctaaacatgaatagaacaatctagaaacatgtagaacctttatgttattctaattttctctaat |
20979064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 606 - 689
Target Start/End: Original strand, 4592 - 4675
Alignment:
| Q |
606 |
gatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
689 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| |||||||||||||||| ||| ||||||| | |||| |||||||||| |
|
|
| T |
4592 |
gatgtttctaggcttgaacttaacctagacattaacaaaacaatctagaaacatgtagtaactttatgttattttagttttctc |
4675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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